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有丝分裂染色体组织:通用规则与物种特异性变异

Mitotic chromosome organization: General rules meet species-specific variability.

作者信息

Beseda Tomáš, Cápal Petr, Kubalová Ivona, Schubert Veit, Doležel Jaroslav, Šimková Hana

机构信息

Institute of Experimental Botany, Czech Acad. Sci., Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, CZ-77900 Olomouc, Czech Republic.

The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Corrensstrasse 3, D-06466 Seeland, Germany.

出版信息

Comput Struct Biotechnol J. 2020 Feb 3;18:1311-1319. doi: 10.1016/j.csbj.2020.01.006. eCollection 2020.

DOI:10.1016/j.csbj.2020.01.006
PMID:32612754
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7305364/
Abstract

Research on the formation of mitotic chromosomes from interphase chromatin domains, ongoing for several decades, made significant progress in recent years. It was stimulated by the development of advanced microscopic techniques and implementation of chromatin conformation capture methods that provide new insights into chromosome ultrastructure. This review aims to summarize and compare several models of chromatin fiber folding to form mitotic chromosomes and discusses them in the light of the novel findings. Functional genomics studies in several organisms confirmed condensins and cohesins as the major players in chromosome condensation. Here we compare available data on the role of these proteins across lower and higher eukaryotes and point to differences indicating evolutionary different pathways to shape mitotic chromosomes. Moreover, we discuss a controversial phenomenon of the mitotic chromosome ultrastructure - chromosome cavities - and using our super-resolution microscopy data, we contribute to its elucidation.

摘要

几十年来,关于从间期染色质结构域形成有丝分裂染色体的研究近年来取得了重大进展。先进显微镜技术的发展以及染色质构象捕获方法的应用推动了这一研究,这些方法为染色体超微结构提供了新的见解。本综述旨在总结和比较几种染色质纤维折叠形成有丝分裂染色体的模型,并根据新发现对其进行讨论。对多种生物体的功能基因组学研究证实,凝聚素和黏连蛋白是染色体凝聚的主要参与者。在此,我们比较了这些蛋白质在低等和高等真核生物中作用的现有数据,并指出了差异,这些差异表明塑造有丝分裂染色体的进化途径不同。此外,我们讨论了有丝分裂染色体超微结构中的一个有争议的现象——染色体腔,并利用我们的超分辨率显微镜数据,为阐明这一现象做出了贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f31a/7305364/201e050e90d6/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f31a/7305364/586a71f7063c/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f31a/7305364/16875dd4fdea/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f31a/7305364/201e050e90d6/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f31a/7305364/586a71f7063c/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f31a/7305364/16875dd4fdea/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f31a/7305364/201e050e90d6/gr3.jpg

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Hypothesis: The opposing pulling forces exerted by spindle microtubules can cause sliding of chromatin layers and facilitate sister chromatid resolution.

本文引用的文献

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Recurrent Losses and Rapid Evolution of the Condensin II Complex in Insects.昆虫中凝聚素 II 复合物的反复丢失和快速进化。
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Helical coiling of metaphase chromatids.中期染色单体的螺旋缠绕。
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A Multigraph-Based Representation of Hi-C Data.基于多图表示的 Hi-C 数据。
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Image analysis workflows to reveal the spatial organization of cell nuclei and chromosomes.图像分析工作流程揭示细胞核和染色体的空间组织。
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Mitotic chromosomes.有丝分裂染色体。
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Cryo-nanoscale chromosome imaging-future prospects.低温纳米级染色体成像——未来前景
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Prospects and limitations of expansion microscopy in chromatin ultrastructure determination.扩张显微镜在染色质超微结构测定中的前景与局限。
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Folding the genome into mitotic chromosomes.将基因组折叠成有丝分裂染色体。
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Principles of genome folding into topologically associating domains.基因组折叠成拓扑关联域的原则。
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Synergy of topoisomerase and structural-maintenance-of-chromosomes proteins creates a universal pathway to simplify genome topology.拓扑异构酶和结构维持染色体蛋白的协同作用创造了简化基因组拓扑的通用途径。
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Tissue-specific Hi-C analyses of rice, foxtail millet and maize suggest non-canonical function of plant chromatin domains.组织特异性 Hi-C 分析表明,水稻、谷子和玉米的染色质结构域具有非经典功能。
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Chromatin plates in the interphase nucleus.间期核中的染色质板。
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