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美国新冠疫情发病率和死亡率数据的波动反映了诊断和报告因素。

Oscillations in U.S. COVID-19 Incidence and Mortality Data Reflect Diagnostic and Reporting Factors.

作者信息

Bergman Aviv, Sella Yehonatan, Agre Peter, Casadevall Arturo

机构信息

Department of Systems and Computational Biology, Albert Einstein College of Medicine, Bronx, New York, USA

Department of Systems and Computational Biology, Albert Einstein College of Medicine, Bronx, New York, USA.

出版信息

mSystems. 2020 Jul 14;5(4):e00544-20. doi: 10.1128/mSystems.00544-20.

Abstract

The coronavirus disease 2019 (COVID-19) pandemic currently in process differs from other infectious disease calamities that have previously plagued humanity in the vast amount of information that is produced each day, which includes daily estimates of the disease incidence and mortality data. Apart from providing actionable information to public health authorities on the trend of the pandemic, the daily incidence reflects the process of disease in a susceptible population and thus reflects the pathogenesis of COVID-19, the public health response, and diagnosis and reporting. Both new daily cases and daily mortality data in the United States exhibit periodic oscillatory patterns. By analyzing New York City (NYC) and Los Angeles (LA) testing data, we demonstrate that this oscillation in the number of cases can be strongly explained by the daily variation in testing. This seems to rule out alternative hypotheses, such as increased infections on certain days of the week, as driving this oscillation. Similarly, we show that the apparent oscillation in mortality in the U.S. data are mostly an artifact of reporting, which disappears in data sets that record death by episode date, such as the NYC and LA data sets. Periodic oscillations in COVID-19 incidence and mortality data reflect testing and reporting practices and contingencies. Thus, these contingencies should be considered first prior to suggesting biological mechanisms. The incidence and mortality data for the COVID-19 data in the United States show periodic oscillations, giving the curve a distinctive serrated pattern. In this study, we show that these periodic highs and lows in incidence and mortality data are due to daily differences in testing for the virus and death reporting, respectively. These findings are important because they provide an explanation based on public health practices and shortcomings rather than biological explanations, such as infection dynamics. In other words, when oscillations occur in epidemiological data, a search for causes should begin with how the public health system produces and reports the information before considering other causes, such as infection cycles and higher incidences of events on certain days. Our results suggest that when oscillations occur in epidemiological data, this may be a signal that there are shortcomings in the public health system generating that information.

摘要

当前正在肆虐的2019冠状病毒病(COVID-19)大流行,与以往困扰人类的其他传染病灾难有所不同,其每天都会产生海量信息,其中包括疾病发病率和死亡率数据的每日估算值。除了向公共卫生当局提供有关大流行趋势的可操作信息外,每日发病率还反映了易感人群中的疾病进程,从而反映了COVID-19的发病机制、公共卫生应对措施以及诊断和报告情况。美国的每日新增病例和每日死亡率数据均呈现出周期性振荡模式。通过分析纽约市(NYC)和洛杉矶(LA)的检测数据,我们证明病例数量的这种振荡可以由检测的每日变化有力地解释。这似乎排除了其他假设,例如一周中某些日子感染增加导致这种振荡的可能性。同样,我们表明美国数据中死亡率的明显振荡主要是报告造成的假象,在按发病日期记录死亡情况的数据集中(如NYC和LA数据集)这种假象会消失。COVID-19发病率和死亡率数据的周期性振荡反映了检测和报告做法及突发事件。因此,在提出生物学机制之前应首先考虑这些突发事件。美国COVID-19数据的发病率和死亡率数据呈现出周期性振荡,使曲线呈现出独特的锯齿状模式。在本研究中,我们表明发病率和死亡率数据中的这些周期性高峰和低谷分别是由于病毒检测和死亡报告的每日差异所致。这些发现很重要,因为它们提供了基于公共卫生实践和缺陷的解释,而非基于感染动态等生物学解释。换句话说,当流行病学数据出现振荡时,在考虑其他原因(如感染周期和某些日子事件发生率较高)之前,应首先从公共卫生系统如何产生和报告信息方面寻找原因。我们的结果表明,当流行病学数据出现振荡时,这可能表明生成该信息的公共卫生系统存在缺陷。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d0d/7363007/22fdfe60bf5c/mSystems.00544-20-f0001.jpg

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