Departamento de Microbiología y Genética, Campus Miguel de Unamuno, Universidad de Salamanca, 37007 Salamanca, Spain.
Universidad Autónoma de Baja California, Facultad de Ciencias Marinas, Ensenada, Baja California, Mexico.
Int J Syst Evol Microbiol. 2020 Aug;70(8):4668-4682. doi: 10.1099/ijsem.0.004330. Epub 2020 Jul 23.
Ten representative actinobacterial strains isolated from marine sediments collected worldwide were studied to determine their taxonomic status. The strains were previously identified as members of the genus and shared >99 % 16S rRNA gene sequence similarity to the three currently recognized species. Comparative genomic analyses resulted in the delineation of six new species based on average nucleotide identity and digital DNA-DNA hybridization values below 95 and 70 %, respectively. The species status of the six new groups was supported by a core-genome phylogeny reconstructed from 2106 orthologs detected in 118 publicly available genomes. Chemotaxonomic and physiological studies were used to complete the phenotypic characterization of the strains. The fatty acid profiles contained the major components iso-C, C, iso- and anteiso C. Galactose and xylose were common in all whole-sugar patterns but differences were found between the six groups of strains. Polar lipid compositions were also unique for each species. Distinguishable physiological and biochemical characteristics were also recorded. The names proposed are sp. nov., CNY-202 (=DSM 108615=CECT 9739); sp. nov., CNT-569 (=DSM 108614=CECT 9740); sp. nov., CNY-666 (=DSM 108616=CECT 9738); sp. nov., CNT-150 (=DSM 45549=CECT 9741); sp. nov., CNT-138 (=DSM 45547=CECT 9742); and sp. nov., CNT-148 (=DSM 45548=CECT 9743).
从全球采集的海洋沉积物中分离出的 10 株有代表性的放线菌菌株,对其分类地位进行了研究。这些菌株先前被鉴定为属的成员,与目前公认的 3 个种的 16S rRNA 基因序列相似度>99%。比较基因组分析导致根据平均核苷酸同一性和数字 DNA-DNA 杂交值(分别低于 95%和 70%),划定了 6 个新种。从 118 个公开可用的基因组中检测到的 2106 个直系同源物重建的核心基因组系统发育树支持了这 6 个新组的种状态。化学分类和生理研究用于完成菌株的表型特征描述。脂肪酸图谱包含主要成分 iso-C、C、iso- 和 anteiso-C。半乳糖和木糖在所有全糖图谱中都很常见,但在 6 个菌株组之间存在差异。极性脂成分也对每个种是独特的。可区分的生理和生化特征也被记录下来。提出的名称是 种,sp. nov.,CNY-202(=DSM 108615=CECT 9739); 种,sp. nov.,CNT-569(=DSM 108614=CECT 9740); 种,sp. nov.,CNY-666(=DSM 108616=CECT 9738); 种,sp. nov.,CNT-150(=DSM 45549=CECT 9741); 种,sp. nov.,CNT-138(=DSM 45547=CECT 9742);和 种,sp. nov.,CNT-148(=DSM 45548=CECT 9743)。