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宏基因组学在天然新型酶探索与开发中的应用:综述

Metagenomic applications in exploration and development of novel enzymes from nature: a review.

作者信息

Prayogo Fitra Adi, Budiharjo Anto, Kusumaningrum Hermin Pancasakti, Wijanarka Wijanarka, Suprihadi Agung, Nurhayati Nurhayati

机构信息

Department of Biology, Faculty of Science and Mathematics, Diponegoro University, Semarang City, 50275, Indonesia.

Biotechnology Study Program, Faculty of Science and Mathematics, Diponegoro University, Jl. Prof. Sudharto SH, Semarang, 50275, Indonesia.

出版信息

J Genet Eng Biotechnol. 2020 Aug 4;18(1):39. doi: 10.1186/s43141-020-00043-9.

Abstract

BACKGROUND

Microbial community has an essential role in various fields, especially the industrial sector. Microbes produce metabolites in the form of enzymes, which are one of the essential compounds for industrial processes. Unfortunately, there are still numerous microbes that cannot be identified and cultivated because of the limitations of the culture-based method. The metagenomic approach is a solution for researchers to overcome these problems. Metagenomics is a strategy used to analyze the genomes of microbial communities in the environment directly. Metagenomics application used to explore novel enzymes is essential because it allows researchers to obtain data on microbial diversity, reaching of 99% and various types of genes encoding an enzyme that has not yet been identified. Basic methods in metagenomics have been developed and are commonly used in various studies. A basic understanding of metagenomics for researchers is needed, especially young researchers to support the success of the research.

SHORT CONCLUSION

Therefore, this review was done in order to provide a deep understanding of metagenomics. It also discussed the application and basic methods of metagenomics in the exploration of novel enzymes, especially in the latest research. Several types of enzymes, such as cellulases, proteases, and lipases, which have been explored using metagenomics, were reviewed in this article.

摘要

背景

微生物群落在各个领域,尤其是工业领域发挥着重要作用。微生物以酶的形式产生代谢产物,而酶是工业生产过程中的重要化合物之一。不幸的是,由于基于培养方法的局限性,仍有许多微生物无法被识别和培养。宏基因组学方法是研究人员克服这些问题的一种解决方案。宏基因组学是一种直接分析环境中微生物群落基因组的策略。宏基因组学在探索新型酶方面的应用至关重要,因为它使研究人员能够获得微生物多样性数据,覆盖率可达99%,以及各种尚未被识别的编码酶的基因类型。宏基因组学的基本方法已经得到发展,并在各种研究中普遍使用。研究人员,尤其是年轻研究人员,需要对宏基因组学有基本的了解,以支持研究的成功。

简短结论

因此,进行本综述是为了让人们对宏基因组学有更深入的了解。它还讨论了宏基因组学在新型酶探索中的应用和基本方法,特别是在最新研究中的应用。本文综述了几种已通过宏基因组学进行探索的酶,如纤维素酶、蛋白酶和脂肪酶。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/34a9/7403272/3cef98e58573/43141_2020_43_Fig1_HTML.jpg

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