新冠病毒在哥伦比亚的出现和传播。
The arrival and spread of SARS-CoV-2 in Colombia.
机构信息
Grupo de Investigaciones Microbiológicas-UR (GIMUR), Departamento de Biología, Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia.
Instituto Nacional de Salud, Bogotá, Colombia.
出版信息
J Med Virol. 2021 Feb;93(2):1158-1163. doi: 10.1002/jmv.26393. Epub 2020 Aug 13.
Abstract
We performed phylogenomic analysis of severe acute respiratory syndrome coronavirus-2 from 88 infected individuals across different regions of Colombia. Eleven different lineages were detected, suggesting multiple introduction events. Pangolin lineages B.1 and B.1.5 were the most frequent, with B.1 being associated with prior travel to high-risk areas.
摘要
我们对来自哥伦比亚不同地区的 88 名感染者的严重急性呼吸综合征冠状病毒 2 进行了系统发育基因组分析。检测到 11 个不同的谱系，提示存在多次传入事件。穿山甲谱系 B.1 和 B.1.5 最为常见，其中 B.1 与先前前往高风险地区旅行有关。
相似文献
1
The arrival and spread of SARS-CoV-2 in Colombia.新冠病毒在哥伦比亚的出现和传播。
J Med Virol. 2021 Feb;93(2):1158-1163. doi: 10.1002/jmv.26393. Epub 2020 Aug 13.
2
Genomic Epidemiology of Severe Acute Respiratory Syndrome Coronavirus 2, Colombia.哥伦比亚2019冠状病毒病的基因组流行病学
Emerg Infect Dis. 2020 Dec;26(12):2854-2862. doi: 10.3201/eid2612.202969.
3
Phylogenomics reveals multiple introductions and early spread of SARS-CoV-2 into Peru.系统发育基因组学揭示了新冠病毒多次传入秘鲁并早期传播的情况。
J Med Virol. 2021 Oct;93(10):5961-5968. doi: 10.1002/jmv.27167. Epub 2021 Jul 16.
4
SARS-CoV-2 lineage B.6 was the major contributor to early pandemic transmission in Malaysia.新冠病毒变异株 B.6 是马来西亚早期大流行传播的主要贡献者。
PLoS Negl Trop Dis. 2020 Nov 30;14(11):e0008744. doi: 10.1371/journal.pntd.0008744. eCollection 2020 Nov.
5
First COVID-19 case in Zambia - Comparative phylogenomic analyses of SARS-CoV-2 detected in African countries.赞比亚首例新冠肺炎病例 - 对非洲国家检测到的 SARS-CoV-2 的比较系统基因组分析。
Int J Infect Dis. 2021 Jan;102:455-459. doi: 10.1016/j.ijid.2020.09.1480. Epub 2020 Oct 6.
6
Whole genome sequencing and phylogenetic classification of Tunisian SARS-CoV-2 strains from patients of the Military Hospital in Tunis.突尼斯突尼斯军事医院患者的SARS-CoV-2毒株全基因组测序及系统发育分类
Virus Genes. 2020 Dec;56(6):767-771. doi: 10.1007/s11262-020-01795-9. Epub 2020 Oct 9.
7
Genomic epidemiology of SARS-CoV-2 reveals multiple lineages and early spread of SARS-CoV-2 infections in Lombardy, Italy.SARS-CoV-2 的基因组流行病学研究揭示了意大利伦巴第大区的多种谱系和 SARS-CoV-2 感染的早期传播。
Nat Commun. 2021 Jan 19;12(1):434. doi: 10.1038/s41467-020-20688-x.
8
Digging metagenomic data of pangolins revealed SARS-CoV-2 related viruses and other significant viruses.穿山甲宏基因组数据揭示了 SARS-CoV-2 相关病毒和其他重要病毒。
J Med Virol. 2021 Mar;93(3):1786-1791. doi: 10.1002/jmv.26524. Epub 2020 Sep 28.
9
Introduction, Transmission Dynamics, and Fate of Early Severe Acute Respiratory Syndrome Coronavirus 2 Lineages in Santa Clara County, California.引言、传播动态以及加利福尼亚州圣克拉拉县早期严重急性呼吸综合征冠状病毒 2 谱系的命运。
J Infect Dis. 2021 Jul 15;224(2):207-217. doi: 10.1093/infdis/jiab199.
10
A small number of early introductions seeded widespread transmission of SARS-CoV-2 in Québec, Canada.少量的早期输入病例导致 SARS-CoV-2 在加拿大魁北克省的广泛传播。
Genome Med. 2021 Oct 28;13(1):169. doi: 10.1186/s13073-021-00986-9.
引用本文的文献
1
Cognitive reserve, depressive symptoms, obesity, and change in employment status predict mental processing speed and executive function after COVID-19.认知储备、抑郁症状、肥胖及就业状态变化可预测新冠疫情后心理加工速度和执行功能。
Eur Arch Psychiatry Clin Neurosci. 2024 Jan 29. doi: 10.1007/s00406-023-01748-x.
2
Nucleocapsid single point-mutation associated with drop-out on RT-PCR assay for SARS-CoV-2 detection.核衣壳单点突变与 SARS-CoV-2 检测 RT-PCR 试验中的漏检相关。
BMC Infect Dis. 2023 Oct 23;23(1):714. doi: 10.1186/s12879-023-08707-w.
3
Coinfections and Superinfections Associated with COVID-19 in Colombia: A Narrative Review.哥伦比亚 COVID-19 相关的合并感染和再感染：一项叙事性综述。
Medicina (Kaunas). 2023 Jul 20;59(7):1336. doi: 10.3390/medicina59071336.
4
Genomic epidemiology of SARS-CoV-2 variants during the first two years of the pandemic in Colombia.哥伦比亚疫情头两年期间新冠病毒变异株的基因组流行病学
Commun Med (Lond). 2023 Jul 13;3(1):97. doi: 10.1038/s43856-023-00328-3.
5
COVID-19 severity is related to poor executive function in people with post-COVID conditions.新冠病毒疾病的严重程度与新冠后人群的执行功能不佳有关。
J Neurol. 2023 May;270(5):2392-2408. doi: 10.1007/s00415-023-11587-4. Epub 2023 Mar 20.
6
Overview of the SARS-CoV-2 genotypes circulating in Latin America during 2021.2021 年拉丁美洲流行的 SARS-CoV-2 基因型概述。
Front Public Health. 2023 Mar 2;11:1095202. doi: 10.3389/fpubh.2023.1095202. eCollection 2023.
7
Monitoring COVID-19 in Colombia during the first year of the pandemic.疫情第一年期间对哥伦比亚新冠病毒病的监测。
J Public Health Res. 2022 Aug 23;11(3):22799036221115770. doi: 10.1177/22799036221115770. eCollection 2022 Jul.
8
Genomic epidemiological models describe pathogen evolution across fitness valleys.基因组流行病学模型描述了病原体在适应度低谷中的进化。
Sci Adv. 2022 Jul 15;8(28):eabo0173. doi: 10.1126/sciadv.abo0173. Epub 2022 Jul 13.
9
Epidemiological Dynamics of SARS-CoV-2 Variants During Social Protests in Cali, Colombia.哥伦比亚卡利市社会抗议活动期间新冠病毒变异株的流行病学动态
Front Med (Lausanne). 2022 Mar 31;9:863911. doi: 10.3389/fmed.2022.863911. eCollection 2022.
10
First wave of COVID-19 in Venezuela: Epidemiological, clinical, and paraclinical characteristics of first cases.委内瑞拉的 COVID-19 第一波疫情：首批病例的流行病学、临床和辅助检查特征。
J Med Virol. 2022 Mar;94(3):1175-1185. doi: 10.1002/jmv.27449. Epub 2021 Nov 16.
本文引用的文献
1
Comparative tropism, replication kinetics, and cell damage profiling of SARS-CoV-2 and SARS-CoV with implications for clinical manifestations, transmissibility, and laboratory studies of COVID-19: an observational study.SARS-CoV-2 和 SARS-CoV 的比较嗜性、复制动力学和细胞损伤特征分析及其对 COVID-19 临床表现、传染性和实验室研究的影响：一项观察性研究。
Lancet Microbe. 2020 May;1(1):e14-e23. doi: 10.1016/S2666-5247(20)30004-5. Epub 2020 Apr 21.
2
Evolution and epidemic spread of SARS-CoV-2 in Brazil.巴西 SARS-CoV-2 的进化和流行传播。
Science. 2020 Sep 4;369(6508):1255-1260. doi: 10.1126/science.abd2161. Epub 2020 Jul 23.
3
Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus.追踪 SARS-CoV-2 刺突蛋白的变化：D614G 增加 COVID-19 病毒感染力的证据。
Cell. 2020 Aug 20;182(4):812-827.e19. doi: 10.1016/j.cell.2020.06.043. Epub 2020 Jul 3.
4
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology.一种用于 SARS-CoV-2 谱系的动态命名建议，以辅助基因组流行病学研究。
Nat Microbiol. 2020 Nov;5(11):1403-1407. doi: 10.1038/s41564-020-0770-5. Epub 2020 Jul 15.
5
Introductions and early spread of SARS-CoV-2 in the New York City area.SARS-CoV-2 在纽约地区的介绍和早期传播。
Science. 2020 Jul 17;369(6501):297-301. doi: 10.1126/science.abc1917. Epub 2020 May 29.
6
Viral and host factors related to the clinical outcome of COVID-19.与 COVID-19 临床结果相关的病毒和宿主因素。
Nature. 2020 Jul;583(7816):437-440. doi: 10.1038/s41586-020-2355-0. Epub 2020 May 20.
7
COVID-19 in Latin America: Novel transmission dynamics for a global pandemic?拉丁美洲的新冠疫情：全球大流行的新型传播动态？
PLoS Negl Trop Dis. 2020 May 7;14(5):e0008265. doi: 10.1371/journal.pntd.0008265. eCollection 2020 May.
8
Tracing New Clinical Manifestations in Patients with COVID-19 in Chile and Its Potential Relationship with the SARS-CoV-2 Divergence.追踪智利新冠肺炎患者的新临床表现及其与严重急性呼吸综合征冠状病毒2变异的潜在关系。
Curr Trop Med Rep. 2020;7(3):75-78. doi: 10.1007/s40475-020-00205-2. Epub 2020 Apr 18.
9
COVID-19 in Latin America: The implications of the first confirmed case in Brazil.拉丁美洲的新冠疫情：巴西首例确诊病例的影响。
Travel Med Infect Dis. 2020 May-Jun;35:101613. doi: 10.1016/j.tmaid.2020.101613. Epub 2020 Feb 29.
10
The 2019-new coronavirus epidemic: Evidence for virus evolution.2019 新型冠状病毒疫情：病毒进化的证据。
J Med Virol. 2020 Apr;92(4):455-459. doi: 10.1002/jmv.25688. Epub 2020 Feb 7.
Zotero 插件