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对 SARS-CoV-2 宿主蛋白相互作用组的功能研究鉴定了独特和共享的冠状病毒宿主因子。

Functional interrogation of a SARS-CoV-2 host protein interactome identifies unique and shared coronavirus host factors.

机构信息

Laboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.

Cancer Biology and Genetics, MSKCC New York, NY 10065, USA.

出版信息

Cell Host Microbe. 2021 Feb 10;29(2):267-280.e5. doi: 10.1016/j.chom.2020.12.009. Epub 2020 Dec 16.

Abstract

The ongoing severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic has devastated the global economy and claimed more than 1.7 million lives, presenting an urgent global health crisis. To identify host factors required for infection by SARS-CoV-2 and seasonal coronaviruses, we designed a focused high-coverage CRISPR-Cas9 library targeting 332 members of a recently published SARS-CoV-2 protein interactome. We leveraged the compact nature of this library to systematically screen SARS-CoV-2 at two physiologically relevant temperatures along with three related coronaviruses (human coronavirus 229E [HCoV-229E], HCoV-NL63, and HCoV-OC43), allowing us to probe this interactome at a much higher resolution than genome-scale studies. This approach yielded several insights, including potential virus-specific differences in Rab GTPase requirements and glycosylphosphatidylinositol (GPI) anchor biosynthesis, as well as identification of multiple pan-coronavirus factors involved in cholesterol homeostasis. This coronavirus essentiality catalog could inform ongoing drug development efforts aimed at intercepting and treating coronavirus disease 2019 (COVID-19) and help prepare for future coronavirus outbreaks.

摘要

持续的严重急性呼吸系统综合症冠状病毒 2(SARS-CoV-2)大流行已经摧毁了全球经济,并导致超过 170 万人死亡,这是一场紧急的全球卫生危机。为了确定感染 SARS-CoV-2 和季节性冠状病毒所需的宿主因素,我们设计了一个针对最近发表的 SARS-CoV-2 蛋白互作组 332 个成员的靶向聚焦高覆盖率 CRISPR-Cas9 文库。我们利用这个文库的紧凑性质,在两个生理相关的温度下以及三种相关的冠状病毒(人冠状病毒 229E[HCoV-229E]、HCoV-NL63 和 HCoV-OC43)下系统地筛选 SARS-CoV-2,使我们能够以比全基因组研究更高的分辨率探测这个互作组。这种方法产生了一些见解,包括 Rab GTPase 需求和糖基磷脂酰肌醇(GPI)锚定生物合成方面的潜在病毒特异性差异,以及鉴定出多个参与胆固醇稳态的泛冠状病毒因子。这个冠状病毒必需性目录可以为正在进行的旨在拦截和治疗 2019 年冠状病毒病(COVID-19)的药物开发工作提供信息,并为未来的冠状病毒爆发做好准备。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0897/7833927/fb6aeb641d3a/fx1_lrg.jpg

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