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用于分析控制区结构和种内变异的(鲈形目,金线鱼科)第二个完整线粒体基因组。

The second complete mitogenome of (Perciformes, Nemipteridae) to analyze control region structure and intraspecific variation.

作者信息

Wu Ren-Xie, Miao Ben-Ben, Niu Su-Fang, Zhai Yun, Zhang Hao-Ran, Liu Fang, Ou Chun-Xiao

机构信息

College of Fisheries, Guangdong Ocean University, Zhanjiang, Guangdong, P. R. China.

School of Life Sciences, East China Normal University, Shanghai, P. R. China.

出版信息

Mitochondrial DNA B Resour. 2019 Oct 11;4(2):3520-3522. doi: 10.1080/23802359.2019.1675546.

DOI:10.1080/23802359.2019.1675546
PMID:33366067
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7707376/
Abstract

In this study, we reported the complete mitogenome of sampled from the Beibu Gulf, South China Sea. It was 16,734 bp in length and contained 37 canonical mitochondrial genes and 2 non-coding regions. Fifty-one single nucleotide polymorphisms and five insertion and deletions were detected between two mitogenomes, suggesting a high level of intraspecific genetic variation in the species. The control region contained termination associated sequence domain (TAS), central conserved domain (CSB-F, CSB-E, CSB-D, CSB-C, and CSB-A), and conserved sequence block domain (CSB-1, CSB-2, and CSB-3). The phylogenetic analysis of 21 complete mitogenome sequences well supports the phylogenetic position of and reveals the phylogenetic relationship of the genus .

摘要

在本研究中,我们报道了从中国南海北部湾采集样本的完整线粒体基因组。其长度为16,734 bp,包含37个典型的线粒体基因和2个非编码区。在两个线粒体基因组之间检测到51个单核苷酸多态性和5个插入缺失,表明该物种存在高水平的种内遗传变异。控制区包含终止相关序列结构域(TAS)、中央保守结构域(CSB-F、CSB-E、CSB-D、CSB-C和CSB-A)以及保守序列块结构域(CSB-1、CSB-2和CSB-3)。对21个完整线粒体基因组序列的系统发育分析很好地支持了该物种的系统发育位置,并揭示了该属的系统发育关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a080/7707376/7e674dca0ac4/TMDN_A_1675546_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a080/7707376/7e674dca0ac4/TMDN_A_1675546_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a080/7707376/7e674dca0ac4/TMDN_A_1675546_F0001_B.jpg

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本文引用的文献

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Mitochondrial DNA B Resour. 2019 Jul 13;4(2):2506-2508. doi: 10.1080/23802359.2019.1640081.
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The complete mitochondrial genome of Scolopsis vosmeri and phylogenetic relationship of genus Scolopsis.条尾绯鲤的完整线粒体基因组及条尾绯鲤属的系统发育关系
Mitochondrial DNA A DNA Mapp Seq Anal. 2017 Jan;28(1):81-82. doi: 10.3109/19401736.2015.1110808. Epub 2015 Dec 18.
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