Zeng Yonghui, Wu Naicheng, Madsen Anne Mette, Chen Xihan, Gardiner Alastair T, Koblížek Michal
Department of Environmental Science, Aarhus University, Roskilde, Denmark.
Aarhus Institute of Advanced Studies, Aarhus University, Aarhus, Denmark.
Front Microbiol. 2021 Jan 15;11:606612. doi: 10.3389/fmicb.2020.606612. eCollection 2020.
The bacterial phylum Gemmatimonadetes contains members capable of performing bacteriochlorophyll-based phototrophy (chlorophototrophy). However, only one strain of chlorophototrophic Gemmatimonadetes bacteria (CGB) has been isolated to date, hampering our further understanding of their photoheterotrophic lifestyle and the evolution of phototrophy in CGB. By combining a culturomics strategy with a rapid screening technique for chlorophototrophs, we report the isolation of a new member of CGB, sp. nov., from the surface water of a stream in the Zackenberg Valley in High Arctic Greenland. Distinct from the microaerophilic strain AP64, strain TET16 is a strictly aerobic anoxygenic phototroph, lacking many oxygen-independent enzymes while possessing an expanded arsenal for coping with oxidative stresses. Its pigment composition and infra-red absorption properties are also different from , indicating that it possesses a different photosystem apparatus. The complete genome sequence of reveals unique and conserved features in the photosynthesis gene clusters of CGB. We further analyzed metagenome-assembled genomes of CGB obtained from soil and glacier metagenomes from Northeast Greenland, revealing a wide distribution pattern of CGB beyond the stream water investigated.
芽单胞菌门细菌包含能够进行基于细菌叶绿素的光养作用(叶绿素光养作用)的成员。然而,迄今为止,仅分离出了一株叶绿素光养芽单胞菌(CGB),这阻碍了我们对其光能异养生活方式以及CGB中光养作用进化的进一步了解。通过将培养组学策略与叶绿素光养菌的快速筛选技术相结合,我们报告了从格陵兰高北极地区扎克伯格山谷一条溪流的地表水分离出一种新的CGB成员,即TET16菌株。与微需氧的AP64菌株不同,TET16菌株是严格需氧的厌氧光养菌,缺乏许多不依赖氧气的酶,同时拥有一套扩展的应对氧化应激的武器库。其色素组成和红外吸收特性也与AP64菌株不同,表明它拥有不同的光系统装置。TET16菌株的完整基因组序列揭示了CGB光合作用基因簇中独特且保守的特征。我们进一步分析了从格陵兰东北部土壤和冰川宏基因组中获得的CGB宏基因组组装基因组,揭示了CGB在除所研究溪流水之外的广泛分布模式。