• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

时间分辨连续飞秒晶体学揭示通道蛋白视紫红质的早期结构变化。

Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin.

机构信息

Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.

Graduate School of Life Science, University of Hyogo, Hyogo, Japan.

出版信息

Elife. 2021 Mar 23;10:e62389. doi: 10.7554/eLife.62389.

DOI:10.7554/eLife.62389
PMID:33752801
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7987342/
Abstract

Channelrhodopsins (ChRs) are microbial light-gated ion channels utilized in optogenetics to control neural activity with light . Light absorption causes retinal chromophore isomerization and subsequent protein conformational changes visualized as optically distinguished intermediates, coupled with channel opening and closing. However, the detailed molecular events underlying channel gating remain unknown. We performed time-resolved serial femtosecond crystallographic analyses of ChR by using an X-ray free electron laser, which revealed conformational changes following photoactivation. The isomerized retinal adopts a twisted conformation and shifts toward the putative internal proton donor residues, consequently inducing an outward shift of TM3, as well as a local deformation in TM7. These early conformational changes in the pore-forming helices should be the triggers that lead to opening of the ion conducting pore.

摘要

通道视紫红质(ChRs)是微生物光门控离子通道,用于光遗传学以光控制神经活动。光吸收导致视黄醛发色团异构化,随后的蛋白质构象变化可视化为光区分的中间体,与通道的开启和关闭相关联。然而,通道门控的详细分子事件仍不清楚。我们使用自由电子激光进行了通道视紫红质的时间分辨连续飞秒晶体学分析,揭示了光激活后的构象变化。异构化的视黄醛采用扭曲构象,并向假定的内部质子供体残基移动,从而导致 TM3 的向外移动,以及 TM7 中的局部变形。这些孔形成螺旋中的早期构象变化应该是导致离子传导孔打开的触发因素。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/1557d57fdf7e/elife-62389-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/a84ee523150b/elife-62389-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/fd2d15944756/elife-62389-fig1-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/7b2e85e511af/elife-62389-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/a931fd4e33a2/elife-62389-fig2-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/42459a5961a0/elife-62389-fig2-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/f41c1ae1619e/elife-62389-fig2-figsupp3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/d873a8e605bf/elife-62389-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/01ed1d0e1cd2/elife-62389-fig3-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/c30f3ba99bfd/elife-62389-fig3-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/3576eb52f104/elife-62389-fig3-figsupp3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/73014ef3294a/elife-62389-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/7e7e6423d052/elife-62389-fig4-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/e61142758832/elife-62389-fig4-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/b08760cde4d8/elife-62389-fig4-figsupp3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/4f26b0c0065f/elife-62389-fig4-figsupp4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/b1464e16d179/elife-62389-fig4-figsupp5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/eb9dd031f007/elife-62389-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/1557d57fdf7e/elife-62389-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/a84ee523150b/elife-62389-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/fd2d15944756/elife-62389-fig1-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/7b2e85e511af/elife-62389-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/a931fd4e33a2/elife-62389-fig2-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/42459a5961a0/elife-62389-fig2-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/f41c1ae1619e/elife-62389-fig2-figsupp3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/d873a8e605bf/elife-62389-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/01ed1d0e1cd2/elife-62389-fig3-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/c30f3ba99bfd/elife-62389-fig3-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/3576eb52f104/elife-62389-fig3-figsupp3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/73014ef3294a/elife-62389-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/7e7e6423d052/elife-62389-fig4-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/e61142758832/elife-62389-fig4-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/b08760cde4d8/elife-62389-fig4-figsupp3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/4f26b0c0065f/elife-62389-fig4-figsupp4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/b1464e16d179/elife-62389-fig4-figsupp5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/eb9dd031f007/elife-62389-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/57ea/7987342/1557d57fdf7e/elife-62389-fig6.jpg

相似文献

1
Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin.时间分辨连续飞秒晶体学揭示通道蛋白视紫红质的早期结构变化。
Elife. 2021 Mar 23;10:e62389. doi: 10.7554/eLife.62389.
2
Retinal isomerization and water-pore formation in channelrhodopsin-2.视紫红质-2 的视网膜异构化和水孔形成。
Proc Natl Acad Sci U S A. 2018 Apr 3;115(14):3557-3562. doi: 10.1073/pnas.1700091115. Epub 2018 Mar 19.
3
Structural insights into ion conduction by channelrhodopsin 2.通道视紫红质 2 的离子传导结构研究进展
Science. 2017 Nov 24;358(6366). doi: 10.1126/science.aan8862.
4
Unifying photocycle model for light adaptation and temporal evolution of cation conductance in channelrhodopsin-2.通道视紫红质-2 的光适应和阳离子电导的时间演化的统一光循环模型。
Proc Natl Acad Sci U S A. 2019 May 7;116(19):9380-9389. doi: 10.1073/pnas.1818707116. Epub 2019 Apr 19.
5
Proton transfer reactions in the red light-activatable channelrhodopsin variant ReaChR and their relevance for its function.红光可激活的通道视紫红质变体ReaChR中的质子转移反应及其与功能的相关性。
J Biol Chem. 2017 Aug 25;292(34):14205-14216. doi: 10.1074/jbc.M117.779629. Epub 2017 Jun 28.
6
Channelrhodopsin-1 Phosphorylation Changes with Phototactic Behavior and Responds to Physiological Stimuli in .通道视紫红质-1 的磷酸化随趋光行为而变化,并对 作出生理响应。
Plant Cell. 2019 Apr;31(4):886-910. doi: 10.1105/tpc.18.00936. Epub 2019 Mar 12.
7
Red-Tuning of the Channelrhodopsin Spectrum Using Long Conjugated Retinal Analogues.使用长共轭视黄醛类似物对通道视紫红质光谱进行红移调整。
Biochemistry. 2018 Sep 25;57(38):5544-5556. doi: 10.1021/acs.biochem.8b00583. Epub 2018 Sep 12.
8
Mechanism by which water and protein electrostatic interactions control proton transfer at the active site of channelrhodopsin.水和蛋白质静电相互作用控制通道视紫红质活性部位质子转移的机制。
PLoS One. 2018 Aug 7;13(8):e0201298. doi: 10.1371/journal.pone.0201298. eCollection 2018.
9
An Atomistic Model of a Precursor State of Light-Induced Channel Opening of Channelrhodopsin.一种光诱导通道开放的通道视紫红质前体状态的原子模型。
Biophys J. 2018 Oct 2;115(7):1281-1291. doi: 10.1016/j.bpj.2018.08.024. Epub 2018 Aug 27.
10
Glu 87 of channelrhodopsin-1 causes pH-dependent color tuning and fast photocurrent inactivation.通道视紫红质-1的第87位谷氨酸导致pH依赖性颜色调谐和快速光电流失活。
Photochem Photobiol. 2009 Mar-Apr;85(2):564-9. doi: 10.1111/j.1751-1097.2008.00519.x. Epub 2009 Jan 19.

引用本文的文献

1
Structure Determination from Single-Molecule X-ray Scattering Images Using Stochastic Gradient Ascent.使用随机梯度上升法从单分子X射线散射图像确定结构
J Chem Theory Comput. 2025 Aug 26;21(16):8227-8234. doi: 10.1021/acs.jctc.5c00748. Epub 2025 Aug 14.
2
Novel polymer fixed-target microfluidic platforms with an ultra-thin moisture barrier for serial macromolecular crystallography.用于串行大分子晶体学的具有超薄防潮层的新型聚合物固定靶微流控平台。
bioRxiv. 2025 Jul 18:2025.07.13.663488. doi: 10.1101/2025.07.13.663488.
3
A second photoactivatable state of the anion-conducting channelrhodopsin GtACR1 empowers persistent activity.

本文引用的文献

1
Femtosecond-to-millisecond structural changes in a light-driven sodium pump.光驱动钠离子泵的纳秒到毫秒级结构变化。
Nature. 2020 Jul;583(7815):314-318. doi: 10.1038/s41586-020-2307-8. Epub 2020 May 20.
2
Unifying photocycle model for light adaptation and temporal evolution of cation conductance in channelrhodopsin-2.通道视紫红质-2 的光适应和阳离子电导的时间演化的统一光循环模型。
Proc Natl Acad Sci U S A. 2019 May 7;116(19):9380-9389. doi: 10.1073/pnas.1818707116. Epub 2019 Apr 19.
3
Tracking Pore Hydration in Channelrhodopsin by Site-Directed Infrared-Active Azido Probes.
阴离子传导性视紫红质GtACR1的第二种光激活状态赋予持续活性。
Commun Biol. 2025 Aug 8;8(1):1183. doi: 10.1038/s42003-025-08560-4.
4
Ferritinophagy in cardiovascular diseases: mechanisms and potential therapy.心血管疾病中的铁蛋白自噬:机制与潜在治疗方法
Mol Cell Biochem. 2025 Jun 20. doi: 10.1007/s11010-025-05301-3.
5
Pore-Opening and Ion-Conduction Mechanism in Channelrhodopsins C1C2, ChR2, and iChloC by Computational Electrophysiology and Constant-pH Simulations.通过计算电生理学和恒pH模拟研究通道视紫红质C1C2、ChR2和iChloC中的孔开放和离子传导机制
J Chem Inf Model. 2025 Jun 9;65(11):5649-5661. doi: 10.1021/acs.jcim.5c00356. Epub 2025 May 29.
6
Deprotonation of retinal Schiff base and structural dynamics in the early photoreaction of primate blue cone visual pigment.灵长类动物蓝锥视觉色素早期光反应中视黄醛席夫碱的去质子化及结构动力学
Biophys J. 2025 Jun 17;124(12):2070-2081. doi: 10.1016/j.bpj.2025.05.004. Epub 2025 May 7.
7
Ion-conducting and gating molecular mechanisms of channelrhodopsin revealed by true-atomic-resolution structures of open and closed states.通过开放和关闭状态的真实原子分辨率结构揭示的通道视紫红质的离子传导和门控分子机制。
Nat Struct Mol Biol. 2025 Apr 9. doi: 10.1038/s41594-025-01488-7.
8
Structural insights into light-gating of potassium-selective channelrhodopsin.钾离子选择性通道视紫红质光控的结构见解
Nat Commun. 2025 Feb 3;16(1):1283. doi: 10.1038/s41467-025-56491-9.
9
Structural Insights Into the Opening Mechanism of C1C2 Channelrhodopsin.对C1C2通道视紫红质开放机制的结构洞察
J Am Chem Soc. 2025 Jan 8;147(1):1282-1290. doi: 10.1021/jacs.4c15402. Epub 2024 Dec 16.
10
Structural effects of high laser power densities on an early bacteriorhodopsin photocycle intermediate.高激光功率密度对早期菌紫质光循环中间产物的结构影响。
Nat Commun. 2024 Nov 27;15(1):10278. doi: 10.1038/s41467-024-54422-8.
通过定点红外活性叠氮探针追踪通道蛋白水合作用。
Biochemistry. 2019 Mar 5;58(9):1275-1286. doi: 10.1021/acs.biochem.8b01211. Epub 2019 Feb 19.
4
Ultrafast Protein Response in Channelrhodopsin-2 Studied by Time-Resolved Infrared Spectroscopy.通过时间分辨红外光谱研究通道视紫红质-2中的超快蛋白质响应。
J Phys Chem Lett. 2018 Dec 20;9(24):7180-7184. doi: 10.1021/acs.jpclett.8b03382. Epub 2018 Dec 17.
5
Crystal structure of the red light-activated channelrhodopsin Chrimson.红光激活通道蛋白 Chrimson 的晶体结构。
Nat Commun. 2018 Sep 26;9(1):3949. doi: 10.1038/s41467-018-06421-9.
6
An Atomistic Model of a Precursor State of Light-Induced Channel Opening of Channelrhodopsin.一种光诱导通道开放的通道视紫红质前体状态的原子模型。
Biophys J. 2018 Oct 2;115(7):1281-1291. doi: 10.1016/j.bpj.2018.08.024. Epub 2018 Aug 27.
7
Retinal isomerization in bacteriorhodopsin captured by a femtosecond x-ray laser.利用飞秒 X 射线激光捕获的菌紫质中的视网膜异构化。
Science. 2018 Jul 13;361(6398). doi: 10.1126/science.aat0094. Epub 2018 Jun 14.
8
Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.使用时间分辨 X 射线自由电子激光晶体学和笼状底物捕获 P450nor 酶反应中的初始中间产物。
Nat Commun. 2017 Nov 17;8(1):1585. doi: 10.1038/s41467-017-01702-1.
9
Reaction dynamics of the chimeric channelrhodopsin C1C2.嵌合通道蛋白 C1C2 的反应动力学。
Sci Rep. 2017 Aug 3;7(1):7217. doi: 10.1038/s41598-017-07363-w.
10
A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.利用纳秒时间分辨 X 射线自由电子激光分析与细胞色素 c 氧化酶 CO 释放相关的结构变化。
Sci Adv. 2017 Jul 14;3(7):e1603042. doi: 10.1126/sciadv.1603042. eCollection 2017 Jul.