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探索携带 和 的 肺炎克雷伯菌分离株的全球传播

Exploring the Global Spread of Klebsiella grimontii Isolates Possessing and .

机构信息

Institute for Infectious Diseases, University of Berngrid.5734.5, Bern, Switzerland.

Medical Microbiology, Dr Risch Medical Laboratories, Bern-Liebefeld, Switzerland.

出版信息

Antimicrob Agents Chemother. 2021 Aug 17;65(9):e0072421. doi: 10.1128/AAC.00724-21.

Abstract

The spread of plasmid-mediated carbapenemases within Klebsiella oxytoca is well-documented. In contrast, data concerning the closely related species Klebsiella grimontii are scarce. In fact, despite the recent report of the first -producing , nothing is known about its clonality and antibiotic resistance patterns. In a retrospective search in our collection, we identified 2 -positive K. oxytoca strains. Whole-genome sequencing with both Illumina and Nanopore indicated that our strains actually belonged to and were of sequence type 172 (ST172) and ST189. Moreover, the two strains were associated with 297-kb IncHI2/HI2A-pST1 and 90.6-kb IncFII(Yp) plasmids carrying together with and , respectively. In the IncHI2/HI2A plasmid, was located in a class 1 integron (In), while was associated with the -like regulatory elements. Overall, this plasmid was shown to be very similar to those carried by other isolated from food and animal sources (e.g., and spp. detected in Germany and Egypt). The IncFII(Yp) plasmid was unique, and its region was associated with a rare integron (In). Mapping of In indicated a possible origin in Austria from an Enterobacter hormaechei carrying a highly similar plasmid. Core-genome phylogenies indicated that the ST172 belonged to a clone of identical Swedish and Swiss strains (≤15 single nucleotide variants [SNVs] to each other), whereas the ST189 strain was sporadic. Surveillance of carbapenemase-producing K. oxytoca strains should be reinforced to detect and prevent the dissemination of new species belonging to the genus.

摘要

产质粒介导碳青霉烯酶的肺炎克雷伯菌在解鸟氨酸克雷伯菌中传播已有充分记录。相比之下,关于密切相关的物种产酸克雷伯菌的数据则很少。事实上,尽管最近有报道称首次产生了 ,但其克隆性和抗生素耐药模式仍一无所知。在我们的研究中,通过回顾性搜索,我们鉴定出 2 株产阳性的解鸟氨酸克雷伯菌。Illumina 和 Nanopore 全基因组测序表明,我们的菌株实际上属于产酸克雷伯菌和序列型 172(ST172)和 ST189。此外,这两株菌与携带 297-kb IncHI2/HI2A-pST1 和 90.6-kb IncFII(Yp) 质粒相关,这两个质粒分别携带 和 ,同时还带有 和 。在 IncHI2/HI2A 质粒中, 位于 1 类整合子(In)中,而 与 样调节元件相关。总体而言,该质粒与从食品和动物来源分离的其他 (例如在德国和埃及检测到的 spp.)携带的质粒非常相似。IncFII(Yp) 质粒是独特的,其 区与一个罕见的整合子(In)有关。In 的图谱表明,它可能起源于奥地利的一株携带高度相似质粒的蜂房哈夫尼菌。核心基因组系统发育分析表明,ST172 属于相同的瑞典和瑞士菌株的克隆(彼此之间≤15 个单核苷酸变异),而 ST189 菌株是散在的。应加强对产碳青霉烯酶解鸟氨酸克雷伯菌菌株的监测,以发现和预防新的 属物种的传播。

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