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基于单细胞水平配体-受体相互作用的细胞通讯的应用及分析工具。

Applications and analytical tools of cell communication based on ligand-receptor interactions at single cell level.

作者信息

Ma Fen, Zhang Siwei, Song Lianhao, Wang Bozhi, Wei Lanlan, Zhang Fengmin

机构信息

Department of Microbiology, Harbin Medical University, Harbin, 150081, China.

Wu Lien-Teh Institute, Harbin Medical University, Harbin, 150081, China.

出版信息

Cell Biosci. 2021 Jul 3;11(1):121. doi: 10.1186/s13578-021-00635-z.

Abstract

BACKGROUND

Cellular communication is an essential feature of multicellular organisms. Binding of ligands to their homologous receptors, which activate specific cell signaling pathways, is a basic type of cellular communication and intimately linked to many degeneration processes leading to diseases.

MAIN BODY

This study reviewed the history of ligand-receptor and presents the databases which store ligand-receptor pairs. The recently applications and research tools of ligand-receptor interactions for cell communication at single cell level by using single cell RNA sequencing have been sorted out.

CONCLUSION

The summary of the advantages and disadvantages of analysis tools will greatly help researchers analyze cell communication at the single cell level. Learning cell communication based on ligand-receptor interactions by single cell RNA sequencing gives way to developing new target drugs and personalizing treatment.

摘要

背景

细胞通讯是多细胞生物的一个基本特征。配体与其同源受体结合,激活特定的细胞信号通路,这是细胞通讯的一种基本类型,并且与许多导致疾病的退化过程密切相关。

主体

本研究回顾了配体 - 受体的历史,并介绍了存储配体 - 受体对的数据库。通过使用单细胞RNA测序,对配体 - 受体相互作用在单细胞水平上用于细胞通讯的最新应用和研究工具进行了梳理。

结论

分析工具优缺点的总结将极大地帮助研究人员在单细胞水平上分析细胞通讯。通过单细胞RNA测序基于配体 - 受体相互作用来了解细胞通讯为开发新的靶向药物和个性化治疗开辟了道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f9b/8254218/1af956b69efd/13578_2021_635_Fig1_HTML.jpg

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