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一种用于CT图像中具有金字塔注意力和边缘损失的多类别新冠病毒分割网络。

A multi-class COVID-19 segmentation network with pyramid attention and edge loss in CT images.

作者信息

Yu Fuli, Zhu Yu, Qin Xiangxiang, Xin Ying, Yang Dawei, Xu Tao

机构信息

School of Information Science and Engineering East China University of Science and Technology Shanghai 200237 People's Republic of China.

Department of Endocrine and Metabolic Diseases The Affiliated Hospital of Qingdao University Qingdao 266003 People's Republic of China.

出版信息

IET Image Process. 2021 Sep;15(11):2604-2613. doi: 10.1049/ipr2.12249. Epub 2021 May 4.

DOI:10.1049/ipr2.12249
PMID:34226836
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8242907/
Abstract

At the end of 2019, a novel coronavirus COVID-19 broke out. Due to its high contagiousness, more than 74 million people have been infected worldwide. Automatic segmentation of the COVID-19 lesion area in CT images is an effective auxiliary medical technology which can quantitatively diagnose and judge the severity of the disease. In this paper, a multi-class COVID-19 CT image segmentation network is proposed, which includes a pyramid attention module to extract multi-scale contextual attention information, and a residual convolution module to improve the discriminative ability of the network. A wavelet edge loss function is also proposed to extract edge features of the lesion area to improve the segmentation accuracy. For the experiment, a dataset of 4369 CT slices is constructed, including three symptoms: ground glass opacities, interstitial infiltrates, and lung consolidation. The dice similarity coefficients of three symptoms of the model achieve 0.7704, 0.7900, 0.8241 respectively. The performance of the proposed network on public dataset COVID-SemiSeg is also evaluated. The results demonstrate that this model outperforms other state-of-the-art methods and can be a powerful tool to assist in the diagnosis of positive infection cases, and promote the development of intelligent technology in the medical field.

摘要

2019年底,新型冠状病毒COVID-19爆发。由于其高传染性,全球已有超过7400万人感染。CT图像中COVID-19病变区域的自动分割是一种有效的辅助医疗技术,可对疾病的严重程度进行定量诊断和判断。本文提出了一种多类COVID-19 CT图像分割网络,该网络包括一个金字塔注意力模块以提取多尺度上下文注意力信息,以及一个残差卷积模块以提高网络的判别能力。还提出了一种小波边缘损失函数来提取病变区域的边缘特征,以提高分割精度。在实验中,构建了一个包含4369个CT切片的数据集,包括三种症状:磨玻璃影、间质浸润和肺实变。该模型三种症状的骰子相似系数分别达到0.7704、0.7900、0.8241。还评估了所提网络在公共数据集COVID-SemiSeg上的性能。结果表明,该模型优于其他现有方法,可成为辅助诊断阳性感染病例的有力工具,推动医疗领域智能技术的发展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3593/8242907/1737e527eab6/IPR2-15-2604-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3593/8242907/9199867487f2/IPR2-15-2604-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3593/8242907/09fe589c5ee8/IPR2-15-2604-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3593/8242907/41e6ff746bc5/IPR2-15-2604-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3593/8242907/2b82a17a2142/IPR2-15-2604-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3593/8242907/ea0963508b09/IPR2-15-2604-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3593/8242907/1737e527eab6/IPR2-15-2604-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3593/8242907/9199867487f2/IPR2-15-2604-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3593/8242907/09fe589c5ee8/IPR2-15-2604-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3593/8242907/41e6ff746bc5/IPR2-15-2604-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3593/8242907/2b82a17a2142/IPR2-15-2604-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3593/8242907/ea0963508b09/IPR2-15-2604-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3593/8242907/1737e527eab6/IPR2-15-2604-g001.jpg

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