Mahmud Shafi, Elfiky Abdo A, Amin Al, Mohanto Sumon Chandro, Rahman Ekhtiar, Acharjee Uzzal Kumar, Saleh Abu
Genetic Engineering & Biotechnology, University of Rajshahi, Rajshahi, 6205, Bangladesh.
Biophysics Department, Faculty of Science, Cairo University, Giza, Egypt.
Future Virol. 2021 Jun. doi: 10.2217/fvl-2020-0233. Epub 2021 Jul 13.
The newly emerged human coronavirus, SARS-CoV-2, had begun to spread last year and sparked worldwide. In this study, molecular docking is utilized to test some previously approved drugs against the SARS-CoV-2 nonstructural protein 15 (Nsp15). We screened 23 drugs, from which three (saquinavir, valrubicin and aprepitant) show a paramount predicted binding affinity (-9.1, -9.6 and -9.2 kcal/mol, respectively) against SARS-CoV-2 Nsp15. Moreover, saquinavir and aprepitant make nonbonded interactions with Leu201 in the active site cavity of Nsp15, while the drug valrubicin interacts with Arg199 and Leu201. This binding pattern may be effective against the targeted protein, leading to Nsp15 blockage and virus abolition. Additionally, the pharmacological properties of the screened drugs are known since they have been approved against different viruses.
新出现的人类冠状病毒SARS-CoV-2去年开始传播并引发全球关注。在本研究中,利用分子对接来测试一些先前已获批的药物对SARS-CoV-2非结构蛋白15(Nsp15)的作用。我们筛选了23种药物,其中三种(沙奎那韦、缬柔比星和阿瑞匹坦)对SARS-CoV-2 Nsp15显示出极高的预测结合亲和力(分别为-9.1、-9.6和-9.2千卡/摩尔)。此外,沙奎那韦和阿瑞匹坦与Nsp15活性位点腔中的Leu201形成非键相互作用,而药物缬柔比星与Arg199和Leu201相互作用。这种结合模式可能对靶向蛋白有效,导致Nsp15被阻断和病毒失活。此外,由于这些筛选出的药物已被批准用于对抗不同病毒,其药理特性是已知的。