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F31 全基因组序列组装,该菌为香蕉枯萎病病原菌。

Telomere to Telomere Genome Assembly of F31, Causal Agent of Crown Rot Disease of Banana.

机构信息

Department of Food, Environmental and Nutritional Sciences, Università degli Studi di Milano, via Celoria 2, 20133 Milano, Italy.

出版信息

Mol Plant Microbe Interact. 2021 Dec;34(12):1455-1457. doi: 10.1094/MPMI-05-21-0127-A. Epub 2021 Dec 7.

DOI:10.1094/MPMI-05-21-0127-A
PMID:34388352
Abstract

causes crown rot of banana and it is also associated to clinical fusariosis. A chromosome-level genome assembly of F31 obtained combining Nanopore long reads and Illumina paired-end reads resulted in 12 chromosomes plus one contig with overall N of 4.36 Mb, and is presented together with its mitochondrial genome (58,072 bp). The F31 genome includes telomeric regions for 11 of the 12 chromosomes representing one of the most complete genomes available in the species complex. The high-quality assembly of the F31 genome will be a valuable resource for studying the pathogenic interactions occurring between and banana. Moreover, it represents an important resource for understanding the genome evolution in the species complex.[Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.

摘要

引起香蕉冠腐病,也与临床镰刀菌病有关。通过结合纳米孔长读长和 Illumina 配对末端读长获得的 F31 的染色体水平基因组组装产生了 12 条染色体和一个包含全长为 4.36Mb 的片段,以及其线粒体基因组(58072bp)。F31 基因组包括 12 条染色体中的 11 条染色体的端粒区域,这是该种复合体中可用的最完整基因组之一。F31 基因组的高质量组装将成为研究 与香蕉之间发生的致病相互作用的宝贵资源。此外,它还为了解 种复合体的基因组进化提供了重要资源。[公式:见文本]版权所有 © 2021 作者。这是一个在 CC BY-NC-ND 4.0 国际许可下发布的开放获取文章。

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