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基于 3D 残差激励 U-net 的深度学习径向 SMS 心肌灌注重建。

Deep learning for radial SMS myocardial perfusion reconstruction using the 3D residual booster U-net.

机构信息

Utah Center for Advanced Imaging Research (UCAIR), Department of Radiology and Imaging Sciences, University of Utah Salt Lake City, UT, USA; Department of Biomedical Engineering, University of Utah, Salt Lake City, UT, USA.

Utah Center for Advanced Imaging Research (UCAIR), Department of Radiology and Imaging Sciences, University of Utah Salt Lake City, UT, USA; Department of Physics and Astronomy, University of Utah, Salt Lake City, UT, USA; Ming Hsieh Department of Electrical and Computer Engineering, University of Southern California, Los Angeles, CA, USA.

出版信息

Magn Reson Imaging. 2021 Nov;83:178-188. doi: 10.1016/j.mri.2021.08.007. Epub 2021 Aug 21.

Abstract

PURPOSE

To develop an end-to-end deep learning solution for quickly reconstructing radial simultaneous multi-slice (SMS) myocardial perfusion datasets with comparable quality to the pixel tracking spatiotemporal constrained reconstruction (PT-STCR) method.

METHODS

Dynamic contrast enhanced (DCE) radial SMS myocardial perfusion data were obtained from 20 subjects who were scanned at rest and/or stress with or without ECG gating using a saturation recovery radial CAIPI turboFLASH sequence. Input to the networks consisted of complex coil combined images reconstructed using the inverse Fourier transform of undersampled radial SMS k-space data. Ground truth images were reconstructed using the PT-STCR pipeline. The performance of the residual booster 3D U-Net was tested by comparing it to state-of-the-art network architectures including MoDL, CRNN-MRI, and other U-Net variants.

RESULTS

Results demonstrate significant improvements in speed requiring approximately 8 seconds to reconstruct one radial SMS dataset which is approximately 200 times faster than the PT-STCR method. Images reconstructed with the residual booster 3D U-Net retain quality of ground truth PT-STCR images (0.963 SSIM/40.238 PSNR/0.147 NRMSE). The residual booster 3D U-Net has superior performance compared to existing network architectures in terms of image quality, temporal dynamics, and reconstruction time.

CONCLUSION

Residual and booster learning combined with the 3D U-Net architecture was shown to be an effective network for reconstructing high-quality images from undersampled radial SMS datasets while bypassing the reconstruction time of the PT-STCR method.

摘要

目的

开发一种端到端深度学习解决方案,用于快速重建具有与像素跟踪时空约束重建(PT-STCR)方法相当质量的径向同步多切片(SMS)心肌灌注数据集。

方法

使用饱和恢复径向 CAIPI turboFLASH 序列,从 20 名在静息和/或应激状态下接受或不接受心电图门控扫描的受试者中获得动态对比增强(DCE)径向 SMS 心肌灌注数据。网络的输入由使用欠采样的径向 SMS k 空间数据的逆傅里叶变换重建的复杂线圈组合图像组成。使用 PT-STCR 流水线重建真实图像。通过将残差助推器 3D U-Net 与包括 MoDL、CRNN-MRI 和其他 U-Net 变体在内的最先进的网络架构进行比较,测试其性能。

结果

结果表明,重建一个径向 SMS 数据集的速度有了显著提高,大约需要 8 秒,比 PT-STCR 方法快大约 200 倍。使用残差助推器 3D U-Net 重建的图像保留了真实 PT-STCR 图像的质量(0.963 SSIM/40.238 PSNR/0.147 NRMSE)。与现有的网络架构相比,残差和助推学习与 3D U-Net 架构相结合,在图像质量、时间动态和重建时间方面具有更好的性能。

结论

残差和助推学习与 3D U-Net 架构相结合,被证明是一种从欠采样的径向 SMS 数据集重建高质量图像的有效网络,同时绕过了 PT-STCR 方法的重建时间。

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