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新种,新种和新种,来自饮用水系统。

sp. nov., sp. nov. and sp. nov., from drinking water systems.

机构信息

Departamento de Microbiología y Ecología and Colección Española de Cultivos Tipo (CECT), Universitat de València, Valencia, Spain.

出版信息

Int J Syst Evol Microbiol. 2021 Sep;71(9). doi: 10.1099/ijsem.0.005020.

Abstract

A polyphasic taxonomic study was conducted on three strains isolated from drinking water systems that had previously been deposited as species at the Spanish Type Culture Collection in order to complete their classification. Strains CECT 9293, CECT 9390 and CECT 9393 were isolated from sites in Barcelona, Spain, in the framework of a project aimed at generating the first MALDI-TOF database specific for bacteria present in water for human consumption. Their partial 16S rRNA sequences showed that their closest relatives among the type strains of exhibited 98 % similarity or less, supporting their taxonomic novelty. At the same time, comparison between them revealed that strains CECT 9293 and CECT 9393 could perhaps be related at the species level as they shared 99.5 % similarity. However, whole genome sequencing was performed and the subsequent calculation of relatedness indices, average nucleotide identity and estimated DNA-DNA hybridization, ruled out that possibility and confirmed instead that each of the strains should be considered a separate species in the genus . Having clarified their status, we also performed phylogenomic analyses and searched for possible environmental or non-type material sequences that could be related to any of them at the species level. In parallel, the strains were characterized phenotypically and compared to their closest relatives to determine diagnostic traits to support their formal proposal. The proposed species are sp. nov. with the type strain CECT 9293 (=LMG 32084), sp. nov. with the type strain CECT 9390 (=LMG 32085) and sp. nov. with the type strain CECT 9393 (=LMG 32086).

摘要

对三株从饮用水系统中分离出来的菌株进行了多相分类学研究,这些菌株先前被保藏在西班牙典型培养物保藏中心作为 种。在一个旨在生成第一个针对饮用水中存在的细菌的 MALDI-TOF 数据库的项目框架内,从西班牙巴塞罗那的地点分离出了菌株 CECT 9293、CECT 9390 和 CECT 9393。它们的部分 16S rRNA 序列表明,与 种的模式菌株相比,它们最接近的亲缘关系菌株显示出 98%的相似性或更低,支持了它们的分类新颖性。同时,它们之间的比较表明,菌株 CECT 9293 和 CECT 9393 可能在种水平上有关,因为它们共享 99.5%的相似性。然而,进行了全基因组测序,随后计算了亲缘关系指数、平均核苷酸同一性和估计的 DNA-DNA 杂交,排除了这种可能性,并证实了每个菌株都应该被认为是属内的一个单独的种。在澄清了它们的地位后,我们还进行了系统基因组分析,并搜索了可能与它们中的任何一个在种水平上相关的环境或非典型材料序列。同时,对菌株进行了表型特征分析,并与最接近的亲缘关系菌株进行了比较,以确定支持其正式提议的诊断特征。提议的种是 sp. nov.,其模式菌株为 CECT 9293(=LMG 32084), sp. nov.,其模式菌株为 CECT 9390(=LMG 32085)和 sp. nov.,其模式菌株为 CECT 9393(=LMG 32086)。

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