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系统研究酶催化与冷适应之间的联系。

Systematic investigation of the link between enzyme catalysis and cold adaptation.

机构信息

ChEM-H, Stanford University, Stanford, United States.

Department of Biochemistry, Stanford University, Stanford, United States.

出版信息

Elife. 2022 Jan 12;11:e72884. doi: 10.7554/eLife.72884.

Abstract

Cold temperature is prevalent across the biosphere and slows the rates of chemical reactions. Increased catalysis has been predicted to be a dominant adaptive trait of enzymes to reduced temperature, and this expectation has informed physical models for enzyme catalysis and influenced bioprospecting strategies. To systematically test rate enhancement as an adaptive trait to cold, we paired kinetic constants of 2223 enzyme reactions with their organism's optimal growth temperature () and analyzed trends of rate constants as a function of . These data do not support a general increase in rate enhancement in cold adaptation. In the model enzyme ketosteroid isomerase (KSI), there is prior evidence for temperature adaptation from a change in an active site residue that results in a tradeoff between activity and stability. Nevertheless, we found that little of the rate constant variation for 20 KSI variants was accounted for by . In contrast, and consistent with prior expectations, we observed a correlation between stability and across 433 proteins. These results suggest that temperature exerts a weaker selection pressure on enzyme rate constants than stability and that evolutionary forces other than temperature are responsible for the majority of enzymatic rate constant variation.

摘要

低温在整个生物圈中很常见,会降低化学反应的速度。人们曾预测,增加催化作用将是酶适应低温的主要特征,这一预期为酶催化的物理模型提供了信息,并影响了生物勘探策略。为了系统地检验作为适应低温的特征的速率增强,我们将 2223 种酶反应的动力学常数与其生物体的最佳生长温度()配对,并分析了速率常数随的趋势。这些数据不支持普遍存在的低温适应速率增强。在模型酶酮甾体异构酶(KSI)中,先前有证据表明,由于活性部位残基的变化,导致活性和稳定性之间存在权衡,从而导致了温度适应。然而,我们发现,20 个 KSI 变体的速率常数变化中只有很少一部分可以用 来解释。相比之下,与先前的预期一致,我们观察到在 433 种蛋白质中,稳定性与之间存在相关性。这些结果表明,温度对酶速率常数的选择压力比稳定性弱,而且除温度以外的其他进化力量是大多数酶速率常数变化的原因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/24e8/8754429/6ef8d158239c/elife-72884-fig1.jpg

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