多恩比恩衰老速度预测指标(DunedinPACE),一种衰老速度的 DNA 甲基化生物标志物。

DunedinPACE, a DNA methylation biomarker of the pace of aging.

机构信息

Department of Epidemiology & Butler Columbia Aging Center, Columbia University, New York, United States.

Center for Genomic and Computational Biology, Duke University, Durham, United States.

出版信息

Elife. 2022 Jan 14;11:e73420. doi: 10.7554/eLife.73420.

Abstract

BACKGROUND

Measures to quantify changes in the pace of biological aging in response to intervention are needed to evaluate geroprotective interventions for humans. Previously, we showed that quantification of the pace of biological aging from a DNA-methylation blood test was possible (Belsky et al., 2020). Here, we report a next-generation DNA-methylation biomarker of Pace of Aging, DunedinPACE (for Pace of Aging Calculated from the Epigenome).

METHODS

We used data from the Dunedin Study 1972-1973 birth cohort tracking within-individual decline in 19 indicators of organ-system integrity across four time points spanning two decades to model Pace of Aging. We distilled this two-decade Pace of Aging into a single-time-point DNA-methylation blood-test using elastic-net regression and a DNA-methylation dataset restricted to exclude probes with low test-retest reliability. We evaluated the resulting measure, named DunedinPACE, in five additional datasets.

RESULTS

DunedinPACE showed high test-retest reliability, was associated with morbidity, disability, and mortality, and indicated faster aging in young adults with childhood adversity. DunedinPACE effect-sizes were similar to GrimAge Clock effect-sizes. In analysis of incident morbidity, disability, and mortality, DunedinPACE and added incremental prediction beyond GrimAge.

CONCLUSIONS

DunedinPACE is a novel blood biomarker of the pace of aging for gerontology and geroscience.

FUNDING

This research was supported by US-National Institute on Aging grants AG032282, AG061378, AG066887, and UK Medical Research Council grant MR/P005918/1.

摘要

背景

为了评估人类的抗衰老干预措施,需要有量化生物衰老速度变化的措施。此前,我们表明从 DNA 甲基化血液测试中量化生物衰老速度是可行的(Belsky 等人,2020 年)。在这里,我们报告了一种新一代的 DNA 甲基化生物标志物,即衰老速度(DunedinPACE,代表从表观基因组计算的衰老速度)。

方法

我们使用了来自 Dunedin 研究 1972-1973 年出生队列的追踪数据,该研究跟踪了 19 个器官系统完整性指标在四个时间点的个体内下降情况,跨越了二十年,以建模衰老速度。我们使用弹性网络回归将这二十年的衰老速度浓缩为一个单一时间点的 DNA 甲基化血液测试,并使用排除了测试-重测可靠性低的探针的 DNA 甲基化数据集。我们在另外五个数据集上评估了得到的指标,命名为 DunedinPACE。

结果

DunedinPACE 显示出高的测试-重测可靠性,与发病率、残疾和死亡率相关,并表明在童年逆境的年轻人中衰老速度更快。DunedinPACE 的效果大小与 GrimAge Clock 的效果大小相似。在分析新发发病率、残疾和死亡率时,DunedinPACE 和 GrimAge 都增加了额外的预测。

结论

DunedinPACE 是一种新的衰老速度的血液生物标志物,用于老年医学和衰老科学。

资金

这项研究得到了美国国立卫生研究院衰老研究所的资助,资助号为 AG032282、AG061378、AG066887,以及英国医学研究理事会的资助,资助号为 MR/P005918/1。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f555/8853656/c9f9a6eb149b/elife-73420-fig1.jpg

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