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基于深度学习的眼底照相中央浆液性脉络膜视网膜病变分割的简单代码实现。

Simple Code Implementation for Deep Learning-Based Segmentation to Evaluate Central Serous Chorioretinopathy in Fundus Photography.

机构信息

Department of Ophthalmology, Aerospace Medical Center, Korea Air Force, Cheongju, South Korea.

B&VIIT Eye Center, Seoul, South Korea.

出版信息

Transl Vis Sci Technol. 2022 Feb 1;11(2):22. doi: 10.1167/tvst.11.2.22.

Abstract

PURPOSE

Central serous chorioretinopathy (CSC) is a retinal disease that frequently shows resolution and recurrence with serous detachment of the neurosensory retina. Here, we present a deep learning analysis of subretinal fluid (SRF) lesion segmentation in fundus photographs to evaluate CSC.

METHODS

We collected 194 fundus photographs of SRF lesions from the patients with CSC. Three graders manually annotated of the entire SRF area in the retinal images. The dataset was randomly separated into training (90%) and validation (10%) datasets. We used the U-Net segmentation model based on conditional generative adversarial networks (pix2pix) to detect the SRF lesions. The algorithms were trained and validated using Google Colaboratory. Researchers did not need prior knowledge of coding skills or computing resources to implement this code.

RESULTS

The validation results showed that the Jaccard index and Dice coefficient scores were 0.619 and 0.763, respectively. In most cases, the segmentation results overlapped with most of the reference areas in the annotated images. However, cases with exceptional SRFs were not accurate in terms of prediction. Using Colaboratory, the proposed segmentation task ran easily in a web-based environment without setup or personal computing resources.

CONCLUSIONS

The results suggest that the deep learning model based on U-Net from the pix2pix algorithm is suitable for the automatic segmentation of SRF lesions to evaluate CSC.

TRANSLATIONAL RELEVANCE

Our code implementation has the potential to facilitate ophthalmology research; in particular, deep learning-based segmentation can assist in the development of pathological lesion detection solutions.

摘要

目的

中心性浆液性脉络膜视网膜病变(CSC)是一种视网膜疾病,常伴有神经感觉视网膜浆液性脱离而自行缓解和复发。本研究应用深度学习分析眼底照片中视网膜下液(SRF)病变的分割,以评估 CSC。

方法

我们收集了 194 例 CSC 患者的 SRF 病变眼底照片。3 名评分者手动标注视网膜图像中整个 SRF 区域。数据集随机分为训练(90%)和验证(10%)数据集。我们使用基于条件生成对抗网络(pix2pix)的 U-Net 分割模型来检测 SRF 病变。使用 Google Colaboratory 对算法进行训练和验证。研究人员无需具备编码技能或计算资源方面的先验知识即可实现此代码。

结果

验证结果表明,Jaccard 指数和 Dice 系数评分分别为 0.619 和 0.763。在大多数情况下,分割结果与标注图像中的大部分参考区域重叠。然而,对于异常 SRF 的预测并不准确。使用 Colaboratory,基于 pix2pix 的 U-Net 的分割任务可以轻松在基于网络的环境中运行,无需设置或个人计算资源。

结论

基于 pix2pix 算法的 U-Net 深度学习模型适用于自动分割 SRF 病变以评估 CSC。

翻译

汪竹

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c37c/8842634/c247f7d740d8/tvst-11-2-22-f001.jpg

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