Showkat Sadia, Qureshi Shaima
Department of Computer Science and Engineering, National Institute of Technology Srinagar, Jammu and Kashmir, 190006, India.
Chemometr Intell Lab Syst. 2022 May 15;224:104534. doi: 10.1016/j.chemolab.2022.104534. Epub 2022 Mar 11.
Because of COVID-19's effect on pulmonary tissues, Chest X-ray(CXR) and Computed Tomography (CT) images have become the preferred imaging modality for detecting COVID-19 infections at the early diagnosis stages, particularly when the symptoms are not specific. A significant fraction of individuals with COVID-19 have negative polymerase chain reaction (PCR) test results; therefore, imaging studies coupled with epidemiological, clinical, and laboratory data assist in the decision making. With the newer variants of COVID-19 emerging, the burden on diagnostic laboratories has increased manifold. Therefore, it is important to employ beyond laboratory measures to solve complex CXR image classification problems. One such tool is Convolutional Neural Network (CNN), one of the most dominant Deep Learning (DL) architectures. DL entails training a CNN for a task such as classification using extensive datasets. However, the labelled data for COVID-19 is scarce, proving to be a prime impediment to applying DL-assisted analysis. The available datasets are either scarce or too diversified to learn effective feature representations; therefore Transfer Learning (TL) approach is utilized. TL-based ResNet architecture has a powerful representational ability, making it popular in Computer Vision. The aim of this study is two-fold- firstly, to assess the performance of ResNet models for classifying Pneumonia cases from CXR images and secondly, to build a customized ResNet model and evaluate its contribution to the performance improvement. The global accuracies achieved by the five models i.e., ResNet18_v1, ResNet34_v1, ResNet50_v1, ResNet101_v1, ResNet152_v1 are 91.35%, 90.87%, 92.63%, 92.95%, and 92.95% respectively. ResNet50_v1 displayed the highest sensitivity of 97.18%, ResNet101_v1 showed the specificity of 94.02%, and ResNet18_v1 had the highest precision of 93.53%. The findings are encouraging, demonstrating the effectiveness of ResNet in the automatic detection of Pneumonia for COVID-19 diagnosis. The customized ResNet model presented in this study achieved 95% global accuracy, 95.65% precision, 92.74% specificity, and 95.9% sensitivity, thereby allowing a reliable analysis of CXR images to facilitate the clinical decision-making process. All simulations were carried in PyTorch utilizing Quadro 4000 GPU with Intel(R) Xeon(R) CPU E5-1650 v4 @ 3.60 GHz processor and 63.9 GB useable RAM.
由于新冠病毒对肺部组织的影响,胸部X光(CXR)和计算机断层扫描(CT)图像已成为在早期诊断阶段检测新冠病毒感染的首选成像方式,尤其是在症状不具特异性时。相当一部分新冠病毒感染者的聚合酶链反应(PCR)检测结果为阴性;因此,结合流行病学、临床和实验室数据的影像学研究有助于做出决策。随着新冠病毒新变种的出现,诊断实验室的负担大幅增加。因此,采用实验室以外的措施来解决复杂的CXR图像分类问题很重要。卷积神经网络(CNN)就是这样一种工具,它是最主要的深度学习(DL)架构之一。深度学习需要使用大量数据集训练CNN来完成诸如分类等任务。然而,新冠病毒的标注数据稀缺,这被证明是应用深度学习辅助分析的主要障碍。现有的数据集要么稀缺,要么过于多样化,难以学习到有效的特征表示;因此采用了迁移学习(TL)方法。基于迁移学习的ResNet架构具有强大的表征能力,使其在计算机视觉领域很受欢迎。本研究的目的有两个:一是评估ResNet模型对CXR图像中肺炎病例进行分类的性能,二是构建一个定制的ResNet模型并评估其对性能提升的贡献。ResNet18_v1、ResNet34_v1、ResNet50_v1、ResNet101_v1、ResNet152_v1这五个模型实现的全局准确率分别为91.35%、90.87%、92.63%、92.95%和92.95%。ResNet50_v1显示出最高的灵敏度,为97.18%,ResNet101_v1显示出特异性为94.02%,ResNet18_v1具有最高的精度,为93.53%。这些发现令人鼓舞,证明了ResNet在自动检测新冠病毒肺炎诊断中的有效性。本研究中提出的定制ResNet模型实现了95%的全局准确率、95.65%的精度、92.74%的特异性和95.9%的灵敏度,从而能够对CXR图像进行可靠分析,以促进临床决策过程。所有模拟均在PyTorch中进行,使用Quadro 4000 GPU,搭配英特尔至强(R)E5-1650 v4 @ 3.60 GHz处理器和63.9 GB可用内存。