Department of Pharmaceutical Biosciences, Uppsala University, Uppsala, Sweden.
CPT Pharmacometrics Syst Pharmacol. 2022 Aug;11(8):991-1001. doi: 10.1002/psp4.12797. Epub 2022 Apr 28.
Parametric time-to-event analysis is an important pharmacometric method to predict the probability of an event up until a certain time as a function of covariates and/or drug exposure. Modeling is performed at the level of the hazard function describing the instantaneous rate of an event occurring at that timepoint. We give an overview of the parametric time-to-event analysis starting with graphical exploration by Kaplan-Meier plotting for the event data including censoring and nonparametric hazard estimators such as the kernel-based visual hazard comparison for the underlying hazard. The most common hazard functions including the exponential, Gompertz, Weibull, log-normal, log-logistic, and circadian functions are described in detail. A Shiny application was developed to graphically guide the modeler which of the most common hazard functions presents a similar shape compared to the data in order to guide which hazard functions to test in the parametric time-to-event analysis. For the chosen hazard function(s), the Shiny application can additionally be used to explore corresponding parameter values to inform on suitable initial estimates for parametric modeling as well as on possible covariate or treatment relationships to certain parameters. Moreover, it can be used for the dissemination of results as well as communication, training, and workshops on time-to-event analysis. By guiding the modeler on which functions and what parameter values to test and compare as well as to assist in dissemination, the Shiny application developed here greatly supports the modeler in complicated parametric time-to-event modeling.
参数生存时间分析是一种重要的药物计量学方法,用于预测在特定时间内事件发生的概率,其函数为协变量和/或药物暴露。建模是在描述该时间点事件发生瞬时率的危险函数水平上进行的。我们首先通过 Kaplan-Meier 绘图对事件数据(包括删失)进行图形探索,概述参数生存时间分析,包括非参数危险估计器,例如基于核的视觉危险比较,以了解潜在危险。详细描述了最常见的危险函数,包括指数、戈珀特、威布尔、对数正态、对数逻辑和昼夜节律函数。开发了一个 Shiny 应用程序,用于图形化指导建模者,比较最常见的危险函数与数据的相似形状,以指导在参数生存时间分析中测试哪些危险函数。对于选定的危险函数,Shiny 应用程序还可以用于探索相应的参数值,以告知参数建模的合适初始估计,以及与某些参数的可能协变量或治疗关系。此外,它可用于传播结果以及关于生存时间分析的沟通、培训和研讨会。通过指导建模者测试和比较哪些函数和参数值,以及协助传播,这里开发的 Shiny 应用程序极大地支持了复杂的参数生存时间分析中的建模者。