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植物钙结合蛋白结构-功能关系的计算研究。

A computational study on the structure-function relationships of plant caleosins.

机构信息

Biotechnology Department, College of Agriculture and Natural Resources, University of Tehran, Tehran, 4111, Iran.

出版信息

Sci Rep. 2023 Jan 2;13(1):72. doi: 10.1038/s41598-022-26936-y.

Abstract

Plant cells store energy in oil bodies constructed by structural proteins such as oleosins and caleosins. Although oil bodies usually accumulate in the seed and pollen of plants, caleosins are present in various organs and organelles. This issue, coupled with the diverse activities of caleosins, complicates the description of these oleo-proteins. Therefore, the current article proposes a new classification based on the bioinformatics analysis of the transmembrane topology of caleosins. Accordingly, the non-membrane class are the most abundant and diverse caleosins, especially in lower plants. Comparing the results with other reports suggests a stress response capacity for these caleosins. However, other classes play a more specific role in germination and pollination. A phylogenetic study also revealed two main clades that were significantly different in terms of caleosin type, expression profile, molecular weight, and isoelectric point (P < 0.01). In addition to the biochemical significance of the findings, predicting the structure of caleosins is necessary for constructing oil bodies used in the food and pharmaceutical industries.

摘要

植物细胞将能量储存在由结构蛋白(如油体蛋白和钙结合蛋白)构建的油体中。尽管油体通常在植物的种子和花粉中积累,但钙结合蛋白存在于各种器官和细胞器中。这个问题,加上钙结合蛋白的多种活性,使得这些油蛋白的描述变得复杂。因此,本文提出了一种基于钙结合蛋白跨膜拓扑结构的生物信息学分析的新分类方法。相应地,非膜类是最丰富和多样化的钙结合蛋白,尤其是在低等植物中。将结果与其他报告进行比较表明,这些钙结合蛋白具有应激反应能力。然而,其他类则在发芽和授粉中发挥更具体的作用。系统发育研究还揭示了两个主要的分支,它们在钙结合蛋白类型、表达谱、分子量和等电点方面存在显著差异(P<0.01)。除了发现的生化意义外,预测钙结合蛋白的结构对于构建用于食品和制药行业的油体也是必要的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/171b/9807586/1df8822f5415/41598_2022_26936_Fig1_HTML.jpg

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