College of Marine and Biological Engineering, Yancheng Teachers University, Yancheng 224002, China.
State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
Genes (Basel). 2023 Feb 27;14(3):603. doi: 10.3390/genes14030603.
Okra ( L.) is a particular vegetable with both edible and medicinal values. However, the expression pattern of the okra reference genes in response to abiotic stress has not been explored. In the present study, 18 potential reference genes were selected from okra in various tissues and abiotic stress conditions, and their expression levels were detected by Real-Time quantitative PCR (RT-qPCR). Their expression stabilities were calculated by four algorithms (geNorm, NormFinder, BestKeeper, and RefFinder). Under cold stress, the most stable genes included and (leaf), and (root), and (stem), and and (different tissues). Under salt stress, and (leaf), and (root), and (stem), and and (different tissues) were the most stable genes. Under drought stress, and in the leaf, and in the root, and in the stem, and and in different tissues were most stably expressed in okra. In addition, complete sequencing results by RefFinder showed that and in the leaf, and in the root, and in the stem, and and in different tissues, were most the suitable reference genes for okra. Furthermore, transcription factor was used to verify the reliability of RT-qPCR values. In summary, this study was carried out to demonstrate the potential reference genes of okra under abiotic stress, aiming to provide a molecular basis for functional gene analysis and regulatory mechanism research of okra.
黄秋葵(L.)是一种具有食用和药用价值的特殊蔬菜。然而,黄秋葵参考基因在非生物胁迫下的表达模式尚未得到探索。本研究从黄秋葵的不同组织和非生物胁迫条件下选择了 18 个潜在的参考基因,并通过实时定量 PCR(RT-qPCR)检测其表达水平。使用 4 种算法(geNorm、NormFinder、BestKeeper 和 RefFinder)计算它们的表达稳定性。在冷胁迫下,最稳定的基因包括(叶)、(根)、(茎)和(不同组织)。在盐胁迫下,最稳定的基因包括(叶)、(根)、(茎)和(不同组织)。在干旱胁迫下,在叶片中最稳定的基因为和,在根中最稳定的基因为和,在茎中最稳定的基因为和,在不同组织中最稳定的基因为和。此外,RefFinder 的完整测序结果表明,在叶片中最稳定的基因为和,在根中最稳定的基因为和,在茎中最稳定的基因为和,在不同组织中最稳定的基因为和。进一步的,转录因子的验证表明 RT-qPCR 值是可靠的。综上所述,本研究旨在为黄秋葵功能基因分析和调控机制研究提供分子基础,证明了黄秋葵在非生物胁迫下的潜在参考基因。