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全基因组调查和 SBT 家族基因在. 的共表达网络分析

Genome-Wide Investigation and Co-Expression Network Analysis of SBT Family Gene in .

机构信息

State Key Laboratory of Plant Environmental Resilience, College of Biological Sciences, China Agricultural University, Beijing 100193, China.

State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China.

出版信息

Int J Mol Sci. 2023 Mar 17;24(6):5760. doi: 10.3390/ijms24065760.

Abstract

Subtilases (SBTs), which belong to the serine peptidases, control plant development by regulating cell wall properties and the activity of extracellular signaling molecules, and affect all stages of the life cycle, such as seed development and germination, and responses to biotic and abiotic environments. In this study, 146 , 138 , 89 and 84 SBTs were identified and divided into six subfamilies. Cotton SBTs are unevenly distributed on chromosomes. Synteny analysis showed that the members of SBT1 and SBT4 were expanded in cotton compared to . Co-expression network analysis showed that six SBT gene family members were in a network, among which five SBT1 genes and their and direct homologues were down-regulated by salt treatment, indicating that the co-expression network might share conserved functions. Through co-expression network and annotation analysis, these SBTs may be involved in the biological processes of auxin transport, ABA signal transduction, cell wall repair and root tissue development. In summary, this study provides valuable information for the study of SBT genes in cotton and excavates SBT genes in response to salt stress, which provides ideas for cotton breeding for salinity resistance.

摘要

丝氨酸肽酶家族的丝氨酸内切酶(SBTs)通过调节细胞壁特性和细胞外信号分子的活性来控制植物的发育,并影响生命周期的所有阶段,如种子发育和萌发以及对生物和非生物环境的响应。在这项研究中,鉴定到 146、138、89 和 84 个 SBTs,并将其分为六个亚家族。棉属 SBTs 在染色体上不均匀分布。共线性分析表明,与 相比,SBT1 和 SBT4 的成员在棉中得到了扩展。共表达网络分析表明,六个 SBT 基因家族成员形成了一个网络,其中五个 SBT1 基因及其 和 直系同源物受盐处理下调,表明该共表达网络可能具有保守的功能。通过共表达网络和注释分析,这些 SBTs 可能参与生长素运输、ABA 信号转导、细胞壁修复和根组织发育等生物学过程。总之,该研究为棉属 SBT 基因的研究提供了有价值的信息,并挖掘了响应盐胁迫的 SBT 基因,为耐盐性棉花的培育提供了思路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/87d8/10056545/afa03bc4a711/ijms-24-05760-g001.jpg

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