Liu Qing, Yang Lei-Lei, Xin Yu-Hua
China General Microbiological Culture Collection Center (CGMCC), Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.
Front Microbiol. 2023 Mar 20;14:1115168. doi: 10.3389/fmicb.2023.1115168. eCollection 2023.
The bacterial genus includes at present 14 species that live in cryospheric environments. In this study, we analyzed 101 genomes of with pure cultures obtained from GenBank. They could be classified into 44 species based on average nucleotide identity (ANI) analysis, showing the diversity of . Among these, 19 strains in our laboratory were isolated from the glacier samples in China. The pairwise ANI values of these 19 strains and known species were <95%, indicating that they represented 19 novel species. The comparative genomic analysis showed significant differences in gene content between the two groups with a maximum growth temperature ( ) of ≤ 20°C and a of >20°C. A comprehensive and robust phylogenetic tree, including 14 known species and 19 novel species, was constructed and showed five phylogenetic branches based on 265 concatenated single-copy gene sequences. The parameter had a strong phylogenetic signal, indicating that the temperature adaptation of was largely through vertical transfer rather than horizontal gene transfer and was affected by selection. Furthermore, using polyphasic taxonomy combined with phylogenomic analysis, we proposed 19 novel species of the genus by the following 19 names: sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., and sp. nov. Overall, the taxonomy and genomic analysis can improve our knowledge of phenotypic diversity, genetic diversity, and evolutionary characteristics of .
该细菌属目前包括14个生活在冰冻圈环境中的物种。在本研究中,我们分析了从GenBank获得的101个该属纯培养物的基因组。基于平均核苷酸同一性(ANI)分析,它们可被分类为44个物种,显示出该属的多样性。其中,我们实验室的19株菌株是从中国的冰川样本中分离出来的。这19株菌株与已知物种的成对ANI值<95%,表明它们代表19个新物种。比较基因组分析显示,最高生长温度()≤20°C和>20°C的两组之间在基因含量上存在显著差异。基于265个串联单拷贝基因序列构建了一个全面且可靠的系统发育树,包括14个已知物种和19个新物种,显示出五个系统发育分支。该参数具有很强的系统发育信号,表明该属的温度适应性很大程度上是通过垂直转移而非水平基因转移,并且受到选择的影响。此外,通过多相分类法结合系统发育基因组分析,我们用以下19个名称提出了该属的19个新物种:新种、新种、新种、新种、新种、新种、新种、新种、新种、新种、新种、新种、新种、新种、新种、新种、新种、新种和新种。总体而言,分类学和基因组分析可以提高我们对该属表型多样性、遗传多样性和进化特征的认识。