Pregizer Steven, Vreven Thom, Mathur Mohit, Robinson Luke N
Visterra Inc., Waltham, MA, United States.
Front Mol Biosci. 2023 Apr 5;10:1176856. doi: 10.3389/fmolb.2023.1176856. eCollection 2023.
Single cell sequencing technologies have rapidly advanced in the last decade and are increasingly applied to gain unprecedented insights by deconstructing complex biology to its fundamental unit, the individual cell. First developed for measurement of gene expression, single cell sequencing approaches have evolved to allow simultaneous profiling of multiple additional features, including chromatin accessibility within the nucleus and protein expression at the cell surface. These multi-omic approaches can now further be applied to cells , capturing the spatial context within which their biology occurs. To extract insights from these complex datasets, new computational tools have facilitated the integration of information across different data types and the use of machine learning approaches. Here, we summarize current experimental and computational methods for generation and integration of single cell multi-omic datasets. We focus on opportunities for multi-omic single cell sequencing to augment therapeutic development for kidney disease, including applications for biomarkers, disease stratification and target identification.
在过去十年中,单细胞测序技术迅速发展,并越来越多地被应用,通过将复杂生物学解构到其基本单元——单个细胞,从而获得前所未有的见解。单细胞测序方法最初是为测量基因表达而开发的,如今已不断发展,能够同时分析多个其他特征,包括细胞核内的染色质可及性和细胞表面的蛋白质表达。这些多组学方法现在可以进一步应用于细胞,捕捉其生物学过程发生的空间背景。为了从这些复杂的数据集中提取见解,新的计算工具促进了不同数据类型之间信息的整合以及机器学习方法的应用。在这里,我们总结了用于生成和整合单细胞多组学数据集的当前实验和计算方法。我们重点关注多组学单细胞测序在促进肾脏疾病治疗发展方面的机会,包括生物标志物、疾病分层和靶点识别等应用。