Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Department of Biochemistry and Molecular Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.
Nucleic Acids Res. 2023 Jul 21;51(13):6899-6913. doi: 10.1093/nar/gkad461.
Diphthamide (DPH), a conserved amino acid modification on eukaryotic translation elongation factor eEF2, is synthesized via a complex, multi-enzyme pathway. While DPH is non-essential for cell viability and its function has not been resolved, diphtheria and other bacterial toxins ADP-ribosylate DPH to inhibit translation. Characterizing Saccharomyces cerevisiae mutants that lack DPH or show synthetic growth defects in the absence of DPH, we show that loss of DPH increases resistance to the fungal translation inhibitor sordarin and increases -1 ribosomal frameshifting at non-programmed sites during normal translation elongation and at viral programmed frameshifting sites. Ribosome profiling of yeast and mammalian cells lacking DPH reveals increased ribosomal drop-off during elongation, and removal of out-of-frame stop codons restores ribosomal processivity on the ultralong yeast MDN1 mRNA. Finally, we show that ADP-ribosylation of DPH impairs the productive binding of eEF2 to elongating ribosomes. Our results reveal that loss of DPH impairs the fidelity of translocation during translation elongation resulting in increased rates of ribosomal frameshifting throughout elongation and leading to premature termination at out-of-frame stop codons. We propose that the costly, yet non-essential, DPH modification has been conserved through evolution to maintain translational fidelity despite being a target for inactivation by bacterial toxins.
二氢卟吩(DPH)是一种存在于真核翻译延伸因子 eEF2 上的保守氨基酸修饰物,其合成途径复杂,涉及多种酶。尽管 DPH 对于细胞活力并非必需,其功能也尚未明确,但白喉毒素和其他细菌毒素会通过 ADP-ribosylation 修饰 DPH 以抑制翻译。我们通过对缺乏 DPH 的酿酒酵母突变体进行表型分析和功能研究,发现 DPH 的缺失会增加真菌翻译抑制剂索拉菌素的抗性,并增加非程序性翻译延伸和病毒程序性移码过程中核糖体在非编码区的脱落。我们对缺乏 DPH 的酵母和哺乳动物细胞进行核糖体图谱分析,发现延伸过程中核糖体脱落增加,去除无义终止密码子后,超长寿的酵母 MDN1 mRNA 上的核糖体延伸过程性得到恢复。最后,我们发现 DPH 的 ADP-ribosylation 会损害 eEF2 与延伸核糖体的有效结合。我们的研究结果表明,DPH 的缺失会损害翻译延伸过程中的易位保真度,导致核糖体在整个延伸过程中更频繁地发生框架移位,并导致无义终止密码子的过早终止。我们提出,尽管 DPH 修饰物是细菌毒素失活的靶点,但它具有很高的成本效益,且对于细胞活力并非必需,因此在进化过程中得以保留,以维持翻译保真度。