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Open-3DSIM:一个开源的三维结构光照明显微镜重建平台。

Open-3DSIM: an open-source three-dimensional structured illumination microscopy reconstruction platform.

机构信息

Department of Biomedical Engineering, College of Future Technology, Peking University, Beijing, China.

National Biomedical Imaging Center, Peking University, Beijing, China.

出版信息

Nat Methods. 2023 Aug;20(8):1183-1186. doi: 10.1038/s41592-023-01958-0. Epub 2023 Jul 20.

Abstract

Open-3DSIM is an open-source reconstruction platform for three-dimensional structured illumination microscopy. We demonstrate its superior performance for artifact suppression and high-fidelity reconstruction relative to other algorithms on various specimens and over a range of signal-to-noise levels. Open-3DSIM also offers the capacity to extract dipole orientation, paving a new avenue for interpreting subcellular structures in six dimensions (xyzθλt). The platform is available as MATLAB code, a Fiji plugin and an Exe application to maximize user-friendliness.

摘要

Open-3DSIM 是一个用于三维结构光照明显微镜的开源重建平台。我们展示了它在各种样本和不同信噪比水平下相对于其他算法在抑制伪影和高保真重建方面的优越性能。Open-3DSIM 还具有提取偶极子方向的能力,为在六个维度(xyzθλt)中解释亚细胞结构开辟了新途径。该平台提供 MATLAB 代码、 Fiji 插件和 Exe 应用程序,以最大程度提高用户友好性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f656/10406603/977a52884be5/41592_2023_1958_Fig1_HTML.jpg

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