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熵拔河决定球状蛋白质液-液相分离中的溶剂效应。

Entropy Tug-of-War Determines Solvent Effects in the Liquid-Liquid Phase Separation of a Globular Protein.

机构信息

Center for Theoretical Chemistry, Ruhr University Bochum, D-44780 Bochum, Germany.

Department of Physical Chemistry II, Ruhr University Bochum, D-44780 Bochum, Germany.

出版信息

J Phys Chem Lett. 2024 Apr 18;15(15):4047-4055. doi: 10.1021/acs.jpclett.3c03421. Epub 2024 Apr 5.

Abstract

Liquid-liquid phase separation (LLPS) plays a key role in the compartmentalization of cells via the formation of biomolecular condensates. Here, we combined atomistic molecular dynamics (MD) simulations and terahertz (THz) spectroscopy to determine the solvent entropy contribution to the formation of condensates of the human eye lens protein γD-Crystallin. The MD simulations reveal an entropy tug-of-war between water molecules that are released from the protein droplets and those that are retained within the condensates, two categories of water molecules that were also assigned spectroscopically. A recently developed THz-calorimetry method enables quantitative comparison of the experimental and computational entropy changes of the released water molecules. The strong correlation mutually validates the two approaches and opens the way to a detailed atomic-level understanding of the different driving forces underlying the LLPS.

摘要

液-液相分离(LLPS)通过形成生物分子凝聚物在细胞的区室化中起着关键作用。在这里,我们结合原子分子动力学(MD)模拟和太赫兹(THz)光谱来确定溶剂熵对人眼晶状体蛋白γD-结晶蛋白凝聚物形成的贡献。MD 模拟揭示了从蛋白质液滴中释放的水分子和保留在凝聚物内的水分子之间的一场熵拉锯战,这两类水分子也在光谱上进行了分配。最近开发的太赫兹量热法可以定量比较释放水分子的实验和计算熵变。这种强烈的相关性相互验证了这两种方法,并为深入了解 LLPS 背后的不同驱动力提供了一种详细的原子水平理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d4a/11033941/511180152f6b/jz3c03421_0001.jpg

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