用于生物燃料生产的候选菌株RC80的高质量基因组草图序列。
High-quality draft genome sequence of sp. RC80, a candidate for biofuel production.
作者信息
Rizzo Gabriella, Choudoir Mallory, Simoes Rachel, Dayarathne Nipuni, DeAngelis Kristen M
机构信息
Department of Microbiology, University of Massachusetts, Amherst, Massachusetts, USA.
Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina, USA.
出版信息
Microbiol Resour Announc. 2024 Jul 18;13(7):e0106723. doi: 10.1128/mra.01067-23. Epub 2024 Jun 7.
Abstract
sp. RC80 was isolated from temperate deciduous forest soil in New England. The assembled genome is a single contig with 5,977,337 bp and 97.15% estimated completion. RC80 contains features for 2,3-butanediol dehydrogenase production and pathways involved in ethanol production.
摘要
菌株RC80是从新英格兰的温带落叶林土壤中分离出来的。组装后的基因组是一个单一的重叠群，长度为5,977,337 bp，估计完成度为97.15%。RC80具有产生2,3-丁二醇脱氢酶的特征以及参与乙醇生产的途径。
相似文献
1
High-quality draft genome sequence of sp. RC80, a candidate for biofuel production.
Microbiol Resour Announc. 2024 Jul 18;13(7):e0106723. doi: 10.1128/mra.01067-23. Epub 2024 Jun 7.
2
Draft genome sequence of sp. strain RC67, an isolate from a long-term forest soil warming experiment in Petersham, Massachusetts.
Microbiol Resour Announc. 2023 Nov 16;12(11):e0037323. doi: 10.1128/MRA.00373-23. Epub 2023 Oct 12.
3
High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: sp., sp., sp., and sp.
Genome Announc. 2017 May 4;5(18):e00300-17. doi: 10.1128/genomeA.00300-17.
4
Insight into metabolic pathways of the potential biofuel producer, Paenibacillus polymyxa ICGEB2008.
Biotechnol Biofuels. 2015 Sep 25;8:159. doi: 10.1186/s13068-015-0338-4. eCollection 2015.
5
Isolation and draft genome sequence of sp CCS19.
J Genomics. 2023 Sep 11;11:45-47. doi: 10.7150/jgen.87228. eCollection 2023.
6
High-quality genomes of spp. RC334 and RC343, isolated from a long-term forest soil warming experiment.
Microbiol Resour Announc. 2023 Sep 19;12(9):e0037123. doi: 10.1128/MRA.00371-23. Epub 2023 Aug 28.
7
Draft Genome Sequence of Cellulolytic and Xylanolytic Paenibacillus sp. A59, Isolated from Decaying Forest Soil from Patagonia, Argentina.
Genome Announc. 2015 Oct 22;3(5):e01233-15. doi: 10.1128/genomeA.01233-15.
8
Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park.
Stand Genomic Sci. 2012 Jul 30;6(3):381-400. doi: 10.4056/sigs.2605792. Epub 2012 Jul 27.
9
Draft genome sequence of Paenibacillus sp. EZ-K15 isolated from wastewater systems.
BMC Res Notes. 2017 Dec 12;10(1):734. doi: 10.1186/s13104-017-3069-8.
10
Paenibacillus oleatilyticus sp. nov., isolated from soil.
Arch Microbiol. 2022 Jul 22;204(8):516. doi: 10.1007/s00203-022-03116-0.
本文引用的文献
1
Assembly of long, error-prone reads using repeat graphs.
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
2
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries.
Nat Commun. 2018 Nov 30;9(1):5114. doi: 10.1038/s41467-018-07641-9.
3
KBase: The United States Department of Energy Systems Biology Knowledgebase.
Nat Biotechnol. 2018 Jul 6;36(7):566-569. doi: 10.1038/nbt.4163.
4
Minimap2: pairwise alignment for nucleotide sequences.
Bioinformatics. 2018 Sep 15;34(18):3094-3100. doi: 10.1093/bioinformatics/bty191.
5
Long-term pattern and magnitude of soil carbon feedback to the climate system in a warming world.
Science. 2017 Oct 6;358(6359):101-105. doi: 10.1126/science.aan2874.
6
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Nat Biotechnol. 2017 Aug 8;35(8):725-731. doi: 10.1038/nbt.3893.
7
Fast and accurate de novo genome assembly from long uncorrected reads.
Genome Res. 2017 May;27(5):737-746. doi: 10.1101/gr.214270.116. Epub 2017 Jan 18.
8
Current knowledge and perspectives of Paenibacillus: a review.
Microb Cell Fact. 2016 Dec 1;15(1):203. doi: 10.1186/s12934-016-0603-7.
9
Insight into metabolic pathways of the potential biofuel producer, Paenibacillus polymyxa ICGEB2008.
Biotechnol Biofuels. 2015 Sep 25;8:159. doi: 10.1186/s13068-015-0338-4. eCollection 2015.
10
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
Zotero 插件