Shen Chuan, Li Xia, Qin Jianfeng, Duan Longfei
Shaannan Eco-economy Research Center, Ankang University, Ankang, China.
Department of Electronic and Information Engineering, Ankang University, Ankang, China.
Front Plant Sci. 2024 Aug 8;15:1444683. doi: 10.3389/fpls.2024.1444683. eCollection 2024.
Plant-derived exosome-like nanoparticles (ELNs) have demonstrated cross-kingdom capabilities in regulating intercellular communication, facilitating drug delivery, and providing therapeutic interventions in humans. However, the functional attributes of konjac-derived ELNs (K-ELNs) remain largely unexplored. This study investigates the isolation, characterization, and functional analysis of K-ELNs, along with the profiling and differential expression analysis of associated miRNAs in both K-ELNs and Konjac tissues. K-ELNs were successfully isolated and characterized from two konjac species using ultracentrifugation, followed by Transmission Electron Microscopy (TEM) and Nanoparticle Tracking Analysis (NTA). Small RNA sequencing identified a total of 3,259 miRNAs across all samples. Differential expression analysis revealed significant differences in miRNA profiles between K-ELNs and tissue samples. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) functional enrichment analysis of target genes provided insights into their roles in modulating pathways associated with diseases such as cancer and neurodegenerative disorders. Additionally, six miRNAs were selected for validation of sequencing results via RT-qPCR. The 5'RLM-RACE method was employed to validate the cleavage sites between differentially expressed miRNAs (DEMs) and their predicted target genes, further substantiating the regulatory roles of miRNAs in konjac. The findings of this study enhance our understanding of the molecular mechanisms underlying the biological functions and applications of K-ELNs, laying the groundwork for future research into their potential therapeutic roles in human health.
植物来源的外泌体样纳米颗粒(ELNs)已在调节细胞间通讯、促进药物递送以及为人类提供治疗干预方面展现出跨界能力。然而,魔芋来源的ELNs(K-ELNs)的功能特性在很大程度上仍未被探索。本研究调查了K-ELNs的分离、表征和功能分析,以及K-ELNs和魔芋组织中相关miRNA的谱分析和差异表达分析。使用超速离心法,随后通过透射电子显微镜(TEM)和纳米颗粒跟踪分析(NTA),成功从两种魔芋品种中分离并表征了K-ELNs。小RNA测序在所有样本中总共鉴定出3259个miRNA。差异表达分析揭示了K-ELNs与组织样本之间miRNA谱的显著差异。对靶基因的基因本体(GO)和京都基因与基因组百科全书(KEGG)功能富集分析,为它们在调节与癌症和神经退行性疾病等疾病相关途径中的作用提供了见解。此外,选择了六个miRNA通过RT-qPCR验证测序结果。采用5'RLM-RACE方法验证差异表达miRNA(DEM)与其预测靶基因之间的切割位点,进一步证实了miRNA在魔芋中的调节作用。本研究结果增进了我们对K-ELNs生物学功能和应用背后分子机制的理解,为未来研究它们在人类健康中的潜在治疗作用奠定了基础。