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基于叶绿素荧光成像和深度双向门控循环单元的番茄幼苗冷害分类

Classification of tomato seedling chilling injury based on chlorophyll fluorescence imaging and DBO-BiLSTM.

作者信息

Dong Zhenfen, Zhao Jing, Ji Wenwen, Wei Wei, Men Yuheng

机构信息

School of Arts and Sciences, Suqian University, Suqian, China.

School of Physics and Electronic Engineering, Yancheng Teachers University, Yancheng, China.

出版信息

Front Plant Sci. 2024 Sep 9;15:1409200. doi: 10.3389/fpls.2024.1409200. eCollection 2024.

Abstract

INTRODUCTION

Tomatoes are sensitive to low temperatures during their growth process, and low temperatures are one of the main environmental limitations affecting plant growth and development in Northeast China. Chlorophyll fluorescence imaging technology is a powerful tool for evaluating the efficiency of plant photosynthesis, which can detect and reflect the effects that plants are subjected to during the low temperature stress stage, including early chilling injury.

METHODS

This article primarily utilizes the chlorophyll fluorescence image set of tomato seedlings, applying the dung beetle optimization (DBO) algorithm to enhance the deep learning bidirectional long short term memory (BiLSTM) model, thereby improving the accuracy of classification prediction for chilling injury in tomatoes. Firstly, the proportion of tomato chilling injury areas in chlorophyll fluorescence images was calculated using a threshold segmentation algorithm to classify tomato cold damage into four categories. Then, the features of each type of cold damage image were filtered using SRCC to extract the data with the highest correlation with cold damage. These data served as the training and testing sample set for the BiLSTM model. Finally, DBO algorithm was applied to enhance the deep learning BiLSTM model, and the DBO-BiLSTM model was proposed to improve the prediction performance of tomato seedling category labels.

RESULTS

The results showed that the DBO-BiLSTM model optimized by DBO achieved an accuracy, precision, recall, and F1 score with an average of over 95%.

DISCUSSION

Compared to the original BiLSTM model, these evaluation parameters improved by 9.09%, 7.02%, 9.16%, and 8.68%, respectively. When compared to the commonly used SVM classification model, the evaluation parameters showed an increase of 6.35%, 7.33%, 6.33%, and 6.5%, respectively. This study was expected to detect early chilling injury through chlorophyll fluorescence imaging, achieve automatic classification and labeling of cold damage data, and lay a research foundation for in-depth research on the cold damage resistance of plants themselves and exploring the application of deep learning classification methods in precision agriculture.

摘要

引言

番茄在生长过程中对低温敏感,低温是影响中国东北地区植物生长发育的主要环境限制因素之一。叶绿素荧光成像技术是评估植物光合作用效率的有力工具,能够检测并反映植物在低温胁迫阶段所受的影响,包括早期冷害。

方法

本文主要利用番茄幼苗的叶绿素荧光图像集,应用蜣螂优化(DBO)算法增强深度学习双向长短期记忆(BiLSTM)模型,从而提高番茄冷害分类预测的准确率。首先,使用阈值分割算法计算叶绿素荧光图像中番茄冷害区域的比例,将番茄冷害分为四类。然后,利用斯皮尔曼等级相关系数(SRCC)对各类冷害图像的特征进行筛选,提取与冷害相关性最高的数据。这些数据作为BiLSTM模型的训练和测试样本集。最后,应用DBO算法增强深度学习BiLSTM模型,提出DBO-BiLSTM模型以提高番茄幼苗类别标签的预测性能。

结果

结果表明,经DBO优化的DBO-BiLSTM模型的准确率、精确率、召回率和F1分数平均超过95%。

讨论

与原始BiLSTM模型相比,这些评估参数分别提高了9.09%、7.02%、9.16%和8.68%。与常用的支持向量机(SVM)分类模型相比,评估参数分别提高了6.35%、7.33%、6.33%和6.5%。本研究有望通过叶绿素荧光成像检测早期冷害,实现冷害数据的自动分类和标注,为深入研究植物自身的抗冷性以及探索深度学习分类方法在精准农业中的应用奠定研究基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4407/11443344/986d42270342/fpls-15-1409200-g001.jpg

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