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多尺度输入层和密集解码器聚合网络用于从 CT 扫描中 COVID-19 病变分割。

Multi-scale input layers and dense decoder aggregation network for COVID-19 lesion segmentation from CT scans.

机构信息

College of Internet of Things Technology, Hangzhou Polytechnic, Hangzhou, 311402, China.

出版信息

Sci Rep. 2024 Oct 10;14(1):23729. doi: 10.1038/s41598-024-74701-0.

DOI:10.1038/s41598-024-74701-0
PMID:39390053
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11467340/
Abstract

Accurate segmentation of COVID-19 lesions from medical images is essential for achieving precise diagnosis and developing effective treatment strategies. Unfortunately, this task presents significant challenges, owing to the complex and diverse characteristics of opaque areas, subtle differences between infected and healthy tissue, and the presence of noise in CT images. To address these difficulties, this paper designs a new deep-learning architecture (named MD-Net) based on multi-scale input layers and dense decoder aggregation network for COVID-19 lesion segmentation. In our framework, the U-shaped structure serves as the cornerstone to facilitate complex hierarchical representations essential for accurate segmentation. Then, by introducing the multi-scale input layers (MIL), the network can effectively analyze both fine-grained details and contextual information in the original image. Furthermore, we introduce an SE-Conv module in the encoder network, which can enhance the ability to identify relevant information while simultaneously suppressing the transmission of extraneous or non-lesion information. Additionally, we design a dense decoder aggregation (DDA) module to integrate feature distributions and important COVID-19 lesion information from adjacent encoder layers. Finally, we conducted a comprehensive quantitative analysis and comparison between two publicly available datasets, namely Vid-QU-EX and QaTa-COV19-v2, to assess the robustness and versatility of MD-Net in segmenting COVID-19 lesions. The experimental results show that the proposed MD-Net has superior performance compared to its competitors, and it exhibits higher scores on the Dice value, Matthews correlation coefficient (Mcc), and Jaccard index. In addition, we also conducted ablation studies on the Vid-QU-EX dataset to evaluate the contributions of each key component within the proposed architecture.

摘要

准确地从医学图像中分割 COVID-19 病变对于实现精确诊断和制定有效的治疗策略至关重要。不幸的是,由于不透明区域的复杂和多样化特征、受感染组织和健康组织之间的细微差异以及 CT 图像中的噪声存在,这一任务具有很大的挑战性。为了解决这些困难,本文设计了一种新的基于多尺度输入层和密集解码器聚合网络的深度学习架构(命名为 MD-Net),用于 COVID-19 病变分割。在我们的框架中,U 形结构是促进准确分割所需的复杂层次表示的基础。然后,通过引入多尺度输入层(MIL),该网络可以有效地分析原始图像中的细粒度细节和上下文信息。此外,我们在编码器网络中引入了 SE-Conv 模块,它可以增强识别相关信息的能力,同时抑制无关或非病变信息的传递。此外,我们设计了一个密集解码器聚合(DDA)模块,以整合来自相邻编码器层的特征分布和重要的 COVID-19 病变信息。最后,我们在两个公开可用的数据集 Vid-QU-EX 和 QaTa-COV19-v2 上进行了全面的定量分析和比较,以评估 MD-Net 在分割 COVID-19 病变方面的稳健性和通用性。实验结果表明,与竞争对手相比,所提出的 MD-Net 具有更好的性能,并且在 Dice 值、马修斯相关系数(Mcc)和 Jaccard 指数方面的得分更高。此外,我们还在 Vid-QU-EX 数据集上进行了消融研究,以评估所提出架构中每个关键组件的贡献。

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