• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

DPA - 2:作为多任务学习者的大型原子模型。

DPA-2: a large atomic model as a multi-task learner.

作者信息

Zhang Duo, Liu Xinzijian, Zhang Xiangyu, Zhang Chengqian, Cai Chun, Bi Hangrui, Du Yiming, Qin Xuejian, Peng Anyang, Huang Jiameng, Li Bowen, Shan Yifan, Zeng Jinzhe, Zhang Yuzhi, Liu Siyuan, Li Yifan, Chang Junhan, Wang Xinyan, Zhou Shuo, Liu Jianchuan, Luo Xiaoshan, Wang Zhenyu, Jiang Wanrun, Wu Jing, Yang Yudi, Yang Jiyuan, Yang Manyi, Gong Fu-Qiang, Zhang Linshuang, Shi Mengchao, Dai Fu-Zhi, York Darrin M, Liu Shi, Zhu Tong, Zhong Zhicheng, Lv Jian, Cheng Jun, Jia Weile, Chen Mohan, Ke Guolin, Weinan E, Zhang Linfeng, Wang Han

机构信息

AI for Science Institute, Beijing 100080, P. R. China.

DP Technology, Beijing 100080, P. R. China.

出版信息

NPJ Comput Mater. 2024;10(1). doi: 10.1038/s41524-024-01493-2. Epub 2024 Dec 19.

DOI:10.1038/s41524-024-01493-2
PMID:40851785
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12369844/
Abstract

The rapid advancements in artificial intelligence (AI) are catalyzing transformative changes in atomic modeling, simulation, and design. AI-driven potential energy models have demonstrated the capability to conduct large-scale, long-duration simulations with the accuracy of electronic structure methods. However, the model generation process remains a bottleneck for large-scale applications. We propose a shift towards a model-centric ecosystem, wherein a large atomic model (LAM), pre-trained across multiple disciplines, can be efficiently fine-tuned and distilled for various downstream tasks, thereby establishing a new framework for molecular modeling. In this study, we introduce the DPA-2 architecture as a prototype for LAMs. Pre-trained on a diverse array of chemical and materials systems using a multi-task approach, DPA-2 demonstrates superior generalization capabilities across multiple downstream tasks compared to the traditional single-task pre-training and fine-tuning methodologies. Our approach sets the stage for the development and broad application of LAMs in molecular and materials simulation research.

摘要

人工智能(AI)的快速发展正在催化原子建模、模拟和设计方面的变革性变化。人工智能驱动的势能模型已展示出能够以电子结构方法的精度进行大规模、长时间模拟的能力。然而,模型生成过程仍然是大规模应用的瓶颈。我们建议转向以模型为中心的生态系统,在该系统中,跨多学科预训练的大型原子模型(LAM)可以针对各种下游任务进行高效微调与提炼,从而建立一个分子建模的新框架。在本研究中,我们引入DPA - 2架构作为LAMs的原型。DPA - 2使用多任务方法在各种化学和材料系统上进行预训练,与传统的单任务预训练和微调方法相比,它在多个下游任务中展现出卓越的泛化能力。我们的方法为LAMs在分子和材料模拟研究中的开发与广泛应用奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b696/12369844/3834969a6300/nihms-2092740-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b696/12369844/8b4712d6a50f/nihms-2092740-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b696/12369844/d2423777f17c/nihms-2092740-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b696/12369844/fa26b057dd6f/nihms-2092740-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b696/12369844/614f3265b5e1/nihms-2092740-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b696/12369844/3834969a6300/nihms-2092740-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b696/12369844/8b4712d6a50f/nihms-2092740-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b696/12369844/d2423777f17c/nihms-2092740-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b696/12369844/fa26b057dd6f/nihms-2092740-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b696/12369844/614f3265b5e1/nihms-2092740-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b696/12369844/3834969a6300/nihms-2092740-f0005.jpg

相似文献

1
DPA-2: a large atomic model as a multi-task learner.DPA - 2:作为多任务学习者的大型原子模型。
NPJ Comput Mater. 2024;10(1). doi: 10.1038/s41524-024-01493-2. Epub 2024 Dec 19.
2
Leveraging a foundation model zoo for cell similarity search in oncological microscopy across devices.利用基础模型库进行跨设备肿瘤显微镜检查中的细胞相似性搜索。
Front Oncol. 2025 Jun 18;15:1480384. doi: 10.3389/fonc.2025.1480384. eCollection 2025.
3
Resource-efficient instruction tuning of large language models for biomedical named entity recognition.用于生物医学命名实体识别的大语言模型的资源高效指令微调
J Biomed Inform. 2025 Aug 21;170:104896. doi: 10.1016/j.jbi.2025.104896.
4
Fine-tuning medical language models for enhanced long-contextual understanding and domain expertise.微调医学语言模型以增强长上下文理解和领域专业知识。
Quant Imaging Med Surg. 2025 Jun 6;15(6):5450-5462. doi: 10.21037/qims-2024-2655. Epub 2025 Jun 3.
5
Prescription of Controlled Substances: Benefits and Risks管制药品的处方:益处与风险
6
A New Measure of Quantified Social Health Is Associated With Levels of Discomfort, Capability, and Mental and General Health Among Patients Seeking Musculoskeletal Specialty Care.一种新的量化社会健康指标与寻求肌肉骨骼专科护理的患者的不适程度、能力以及心理和总体健康水平相关。
Clin Orthop Relat Res. 2025 Apr 1;483(4):647-663. doi: 10.1097/CORR.0000000000003394. Epub 2025 Feb 5.
7
Short-Term Memory Impairment短期记忆障碍
8
Artificial intelligence for detecting keratoconus.人工智能在圆锥角膜检测中的应用。
Cochrane Database Syst Rev. 2023 Nov 15;11(11):CD014911. doi: 10.1002/14651858.CD014911.pub2.
9
Are Artificial Intelligence Models Reliable for Clinical Application in Pediatric Fracture Detection on Radiographs? A Systematic Review and Meta-analysis.人工智能模型在儿科骨折X线片检测中的临床应用是否可靠?一项系统评价和荟萃分析。
Clin Orthop Relat Res. 2025 Aug 20. doi: 10.1097/CORR.0000000000003660.
10
AI-Driven Antimicrobial Peptide Discovery: Mining and Generation.人工智能驱动的抗菌肽发现:挖掘与生成
Acc Chem Res. 2025 Jun 17;58(12):1831-1846. doi: 10.1021/acs.accounts.0c00594. Epub 2025 Jun 3.

引用本文的文献

1
Ab Initio Accuracy Neural Network Potential for Drug-Like Molecules.类药物分子的从头算精度神经网络势
Research (Wash D C). 2025 Aug 25;8:0837. doi: 10.34133/research.0837. eCollection 2025.
2
AI-Driven Defect Engineering for Advanced Thermoelectric Materials.用于先进热电材料的人工智能驱动缺陷工程
Adv Mater. 2025 Sep;37(35):e2505642. doi: 10.1002/adma.202505642. Epub 2025 Jun 23.

本文引用的文献

1
A universal graph deep learning interatomic potential for the periodic table.一种用于元素周期表的通用图深度学习原子间势能。
Nat Comput Sci. 2022 Nov;2(11):718-728. doi: 10.1038/s43588-022-00349-3. Epub 2022 Nov 28.
2
Scaling deep learning for materials discovery.深度学习在材料发现中的应用。
Nature. 2023 Dec;624(7990):80-85. doi: 10.1038/s41586-023-06735-9. Epub 2023 Nov 29.
3
DeePMD-kit v2: A software package for deep potential models.深度势能模型工具包v2:用于深度势能模型的软件包。
J Chem Phys. 2023 Aug 7;159(5). doi: 10.1063/5.0155600.
4
Learning local equivariant representations for large-scale atomistic dynamics.学习大规模原子动力学的局部等变表示。
Nat Commun. 2023 Feb 3;14(1):579. doi: 10.1038/s41467-023-36329-y.
5
QDπ: A Quantum Deep Potential Interaction Model for Drug Discovery.QDπ:一种用于药物发现的量子深度学习势能交互模型。
J Chem Theory Comput. 2023 Feb 28;19(4):1261-1275. doi: 10.1021/acs.jctc.2c01172. Epub 2023 Jan 25.
6
DP Compress: A Model Compression Scheme for Generating Efficient Deep Potential Models.DP 压缩:一种用于生成高效深度势能模型的模型压缩方案。
J Chem Theory Comput. 2022 Sep 13;18(9):5559-5567. doi: 10.1021/acs.jctc.2c00102. Epub 2022 Aug 4.
7
Towards universal neural network potential for material discovery applicable to arbitrary combination of 45 elements.面向适用于任意 45 种元素组合的材料发现通用神经网络势。
Nat Commun. 2022 May 30;13(1):2991. doi: 10.1038/s41467-022-30687-9.
8
Transfer learning using attentions across atomic systems with graph neural networks (TAAG).基于图神经网络的原子体系注意力迁移学习(TAAG)。
J Chem Phys. 2022 May 14;156(18):184702. doi: 10.1063/5.0088019.
9
E(3)-equivariant graph neural networks for data-efficient and accurate interatomic potentials.E(3)-等变图神经网络,用于高效准确的原子间势能数据。
Nat Commun. 2022 May 4;13(1):2453. doi: 10.1038/s41467-022-29939-5.
10
Combined Free-Energy Calculation and Machine Learning Methods for Understanding Ligand Unbinding Kinetics.联合自由能计算和机器学习方法以理解配体解吸动力学。
J Chem Theory Comput. 2022 Apr 12;18(4):2543-2555. doi: 10.1021/acs.jctc.1c00924. Epub 2022 Feb 23.