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酵母中σ因子与tRNA基因之间的一致性关联。

Consistent association between sigma elements and tRNA genes in yeast.

作者信息

Brodeur G M, Sandmeyer S B, Olson M V

出版信息

Proc Natl Acad Sci U S A. 1983 Jun;80(11):3292-6. doi: 10.1073/pnas.80.11.3292.

DOI:10.1073/pnas.80.11.3292
PMID:6344079
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC394027/
Abstract

Sigma is a recently described family of transposable elements in yeast (Saccharomyces cerevisiae). The most striking feature of the seven sigma elements that have been previously identified is that all are located 16-18 base pairs upstream from tRNA-encoding regions. Because these cases were all encountered in the process of studying specific tRNA genes, the full extent of the association between sigma elements and tRNA genes could not be assessed. In this paper, we report a more global characterization of the sigma family in a typical laboratory yeast strain: of the 30 copies of sigma that we estimate to be present in the haploid genome, we have cloned and analyzed 25 loci. Although in two cases a pair of sigma elements were found within several kilobases of each other, the majority occur as individual elements at widely dispersed sites. Moreover, in all 25 cases analyzed, the sigma elements are closely associated with tRNA genes. Thus, the sigma transposable element has been shown to have an absolute association with another gene family.

摘要

西格玛(Sigma)是最近在酵母(酿酒酵母)中发现的一个转座子家族。先前已鉴定出的七个西格玛元件最显著的特征是,它们都位于编码tRNA区域上游16 - 18个碱基对处。由于这些情况都是在研究特定tRNA基因的过程中遇到的,所以无法评估西格玛元件与tRNA基因之间关联的全貌。在本文中,我们报告了在一个典型实验室酵母菌株中西格玛家族更全面的特征:我们估计单倍体基因组中存在30个西格玛拷贝,已克隆并分析了其中25个位点。尽管在两个案例中发现一对西格玛元件彼此相距几千碱基,但大多数是以单个元件的形式出现在广泛分散的位点。此外,在所有分析的25个案例中,西格玛元件都与tRNA基因紧密相关。因此,已证明西格玛转座子与另一个基因家族存在绝对关联。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9f8/394027/fb360a2da371/pnas00637-0161-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9f8/394027/7169bd363236/pnas00637-0158-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9f8/394027/bcb7a8536cb7/pnas00637-0158-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9f8/394027/c4a56a3abc50/pnas00637-0159-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9f8/394027/fb360a2da371/pnas00637-0161-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9f8/394027/7169bd363236/pnas00637-0158-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9f8/394027/bcb7a8536cb7/pnas00637-0158-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9f8/394027/c4a56a3abc50/pnas00637-0159-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9f8/394027/fb360a2da371/pnas00637-0161-a.jpg

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1
Consistent association between sigma elements and tRNA genes in yeast.酵母中σ因子与tRNA基因之间的一致性关联。
Proc Natl Acad Sci U S A. 1983 Jun;80(11):3292-6. doi: 10.1073/pnas.80.11.3292.
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Nucleic Acids Res. 1988 Feb 25;16(4):1499-515. doi: 10.1093/nar/16.4.1499.
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sigma, a repetitive element found adjacent to tRNA genes of yeast.σ,一种在酵母tRNA基因附近发现的重复元件。
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Ty1 and delta elements occur adjacent to several tRNA genes in yeast.Ty1和δ元件存在于酵母中几个tRNA基因的相邻位置。
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A novel tRNA(Ala) gene and its adjacent sigma element downstream from the CYP1 (HAP1) gene in Saccharomyces cerevisiae.酿酒酵母中CYP1(HAP1)基因下游的一个新的tRNA(Ala)基因及其相邻的σ元件。
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A hot-spot for transposition of various Ty elements on chromosome V in Saccharomyces cerevisiae.酿酒酵母中位于第五条染色体上的各种Ty元件转座热点区域。
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本文引用的文献

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The nucleotide sequence of a major species of leucine tRNA from bovine liver.来自牛肝脏的亮氨酸tRNA主要种类的核苷酸序列。
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Insertion of a repetitive element at the same position in the 5'-flanking regions of two dissimilar yeast tRNA genes.在两个不同的酵母tRNA基因的5'侧翼区域的相同位置插入一个重复元件。
Proc Natl Acad Sci U S A. 1982 Dec;79(24):7674-8. doi: 10.1073/pnas.79.24.7674.
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The yeast repeated element sigma contains a hormone-inducible promoter.酵母重复元件西格玛含有一个激素诱导型启动子。
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8
Sigma elements are position-specific for many different yeast tRNA genes.西格玛因子对许多不同的酵母tRNA基因具有位置特异性。
Nucleic Acids Res. 1988 Feb 25;16(4):1499-515. doi: 10.1093/nar/16.4.1499.
9
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10
Ty3, a yeast retrotransposon associated with tRNA genes, has homology to animal retroviruses.Ty3是一种与tRNA基因相关的酵母逆转录转座子,与动物逆转录病毒具有同源性。
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4
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Transposable elements.转座元件
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Recombination of dispersed repeated DNA sequences in yeast.酵母中分散重复DNA序列的重组
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The origins of gene instability in yeast.酵母中基因不稳定的起源。
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8
The redundancy of ribosomal and transfer RNA genes in Saccharomyces cerevisiae.酿酒酵母中核糖体RNA基因和转运RNA基因的冗余性。
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Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.通过用DNA聚合酶I进行切口平移在体外将脱氧核糖核酸标记至高比活性。
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10
Reactions at the termini of tRNA with T4 RNA ligase.用T4 RNA连接酶对tRNA末端进行的反应。
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