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核小体颗粒的瞬态电二色性研究。

Transient electric dichroism studies of nucleosomal particles.

作者信息

Crothers D M, Dattagupta N, Hogan M, Klevan L, Lee K S

出版信息

Biochemistry. 1978 Oct 17;17(21):4525-33. doi: 10.1021/bi00614a026.

DOI:10.1021/bi00614a026
PMID:718855
Abstract

We report transient electric dichroism experiments on nucleosomal core particles containing 140 and 175 base pairs of DNA, and on spacerless dinucleosomes. The results indicate that all particles posses a permanent dipole moment. The orientation time of 140 base pair nucleosomes implies an estimated maximum dimension of a = 130 A (a must be at least 111 A), consistent with the disk model. The maximum dimension of the spacerless dinucleosome is estimated to be about 290 A (at least 180 A), ruling out a structure in which two disks are stacked directly on top of each other. The reduced dichroism amplitude indicate that the DNA superhelix axis in nucleosomes aligns perpendicular to the electric field, as expected for a dipole moment directed along a C2 symmetry axis across the disk diameter. Nucleosomes containing 175 base pairs of DNA show a substantially larger dichroism amplitude that do 140 base pair nucleosomes. In the context of the disk model, this result is shown to be consistent with 100 base pairs of DNA per superhelical turn, but not with 80 base pairs per turn.

摘要

我们报道了对含有140和175个碱基对DNA的核小体核心颗粒以及无间隔二聚核小体进行的瞬态电二色性实验。结果表明,所有颗粒都具有永久偶极矩。140碱基对核小体的取向时间意味着估计最大尺寸a = 130埃(a必须至少为111埃),这与盘状模型一致。无间隔二聚核小体的最大尺寸估计约为290埃(至少180埃),排除了两个盘直接堆叠在一起的结构。降低的二色性幅度表明,核小体中的DNA超螺旋轴与电场垂直排列,正如沿着穿过盘直径的C2对称轴方向的偶极矩所预期的那样。含有175个碱基对DNA的核小体显示出比140碱基对核小体大得多的二色性幅度。在盘状模型的背景下,这一结果表明与每超螺旋圈100个碱基对的DNA一致,但与每圈80个碱基对不一致。

相似文献

1
Transient electric dichroism studies of nucleosomal particles.核小体颗粒的瞬态电二色性研究。
Biochemistry. 1978 Oct 17;17(21):4525-33. doi: 10.1021/bi00614a026.
2
Solution structural studies of chromatin fibers.染色质纤维的溶液结构研究。
Biochemistry. 1981 Mar 17;20(6):1438-45. doi: 10.1021/bi00509a006.
3
Physical studies of nucleosome assemble.核小体组装的物理学研究。
Biochemistry. 1978 Oct 17;17(21):4533-40. doi: 10.1021/bi00614a027.
4
Isolation and characterization of a spacerless dinucleosome from H1-deleted chromatin.从H1缺失染色质中分离并鉴定无间隔双核小体。
Nucleic Acids Res. 1977 Dec;4(12):4077-89. doi: 10.1093/nar/4.12.4077.
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Structure of subnucleosomal particles. Tetrameric (H3/H4)2 146 base pair DNA and hexameric (H3/H4)2(H2A/H2B)1 146 base pair DNA complexes.亚核小体颗粒的结构。四聚体(H3/H4)2与146个碱基对的DNA以及六聚体(H3/H4)2(H2A/H2B)1与146个碱基对的DNA复合物。
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Unfolding of nucleosomes by ethidium binding.通过溴化乙锭结合使核小体解折叠。
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Chromatin and nucleosome structure.染色质与核小体结构
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8
Unfolding of 175-base-pair nucleosomes.175个碱基对核小体的解折叠
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Electric properties and structure of DNA-restriction fragments from measurements of the electric dichroism.通过电二色性测量得到的DNA限制性片段的电学性质和结构
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10
DNA-histone interactions in nucleosomes.核小体中的DNA-组蛋白相互作用。
Biophys J. 1980 Oct;32(1):271-82. doi: 10.1016/S0006-3495(80)84956-3.

引用本文的文献

1
Electric oscillation and coupling of chromatin regulate chromosome packaging and transcription in eukaryotic cells.染色质的电振荡和耦合调节真核细胞中的染色体包装和转录。
Theor Biol Med Model. 2012 Jul 3;9:27. doi: 10.1186/1742-4682-9-27.
2
Electric fields generated by synchronized oscillations of microtubules, centrosomes and chromosomes regulate the dynamics of mitosis and meiosis.由微管、中心体和染色体的同步振荡产生的电场调节有丝分裂和减数分裂的动态过程。
Theor Biol Med Model. 2012 Jul 2;9:26. doi: 10.1186/1742-4682-9-26.
3
The structural organization of dinucleosomes and oligonucleosomes. Electric dichroism and birefringence study.
双核小体和寡核小体的结构组织。电二色性和双折射研究。
Nucleic Acids Res. 1981 Nov 11;9(21):5763-84. doi: 10.1093/nar/9.21.5763.
4
Spatial organization of histones and DNA in the nucleosome core particle: a model.核小体核心颗粒中组蛋白与DNA的空间组织:一种模型
Mol Biol Rep. 1980 Dec 31;6(4):219-23. doi: 10.1007/BF00777528.
5
Participation of core histone "tails" in the stabilization of the chromatin solenoid.核心组蛋白“尾巴”在染色质螺线管稳定中的作用。
J Cell Biol. 1982 May;93(2):285-97. doi: 10.1083/jcb.93.2.285.
6
DNA motions in the nucleosome core particle.核小体核心颗粒中的DNA运动。
Proc Natl Acad Sci U S A. 1982 Oct;79(19):5896-900. doi: 10.1073/pnas.79.19.5896.
7
Conversion of B DNA between solution and fiber conformations.B型DNA在溶液构象和纤维构象之间的转变。
Proc Natl Acad Sci U S A. 1981 Jul;78(7):4294-8. doi: 10.1073/pnas.78.7.4294.
8
Effect of DNA length on the nucleosome low salt transition.DNA长度对核小体低盐转变的影响。
Nucleic Acids Res. 1980 Jun 11;8(11):2475-87. doi: 10.1093/nar/8.11.2475.
9
A defined structure of the 30 nm chromatin fibre which accommodates different nucleosomal repeat lengths.一种可容纳不同核小体重复长度的30纳米染色质纤维的特定结构。
EMBO J. 1984 Nov;3(11):2599-604. doi: 10.1002/j.1460-2075.1984.tb02180.x.
10
HMG 14/17 binding affinities and DNAase I sensitivities of nucleoprotein particles.核蛋白颗粒的HMG 14/17结合亲和力及DNA酶I敏感性
Nucleic Acids Res. 1983 Oct 11;11(19):6803-19. doi: 10.1093/nar/11.19.6803.