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遗传足迹法:一种依据基因序列确定其功能的基因组策略。

Genetic footprinting: a genomic strategy for determining a gene's function given its sequence.

作者信息

Smith V, Botstein D, Brown P O

机构信息

Department of Genetics, Stanford University, CA, USA.

出版信息

Proc Natl Acad Sci U S A. 1995 Jul 3;92(14):6479-83. doi: 10.1073/pnas.92.14.6479.

DOI:10.1073/pnas.92.14.6479
PMID:7604017
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC41541/
Abstract

This report describes an efficient strategy for determining the functions of sequenced genes in microorganisms. A large population of cells is subjected to insertional mutagenesis. The mutagenized population is then divided into representative samples, each of which is subjected to a different selection. DNA is prepared from each sample population after the selection. The polymerase chain reaction is then used to determine retrospectively whether insertions into a particular sequence affected the outcome of any selection. The method is efficient because the insertional mutagenesis and each selection need only to be performed once to enable the functions of thousands of genes to be investigated, rather than once for each gene. We tested this "genetic footprinting" strategy using the model organism Saccharomyces cerevisiae.

摘要

本报告描述了一种用于确定微生物中已测序基因功能的有效策略。大量细胞群体接受插入诱变。诱变后的群体随后被分成代表性样本,每个样本接受不同的筛选。筛选后从每个样本群体中制备DNA。然后使用聚合酶链反应来追溯确定插入特定序列是否影响任何筛选的结果。该方法很有效,因为插入诱变和每次筛选只需要进行一次,就能研究数千个基因的功能,而不必对每个基因都进行一次。我们使用模式生物酿酒酵母测试了这种“遗传足迹”策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d90b/41541/8f9807fe9151/pnas01490-0275-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d90b/41541/8f9807fe9151/pnas01490-0275-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d90b/41541/8f9807fe9151/pnas01490-0275-a.jpg

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本文引用的文献

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2
Preferential integration of yeast transposable element Ty into a promoter region.酵母转座因子Ty优先整合到启动子区域。
Nature. 1984;307(5949):386-8. doi: 10.1038/307386a0.
3
Acid phosphatase polypeptides in Saccharomyces cerevisiae are encoded by a differentially regulated multigene family.
Cell Chem Biol. 2022 May 19;29(5):716-729. doi: 10.1016/j.chembiol.2022.04.006. Epub 2022 May 5.
4
Chemical-Genetic Interactions as a Means to Characterize Drug Synergy.化学遗传学相互作用作为一种表征药物协同作用的手段。
Methods Mol Biol. 2021;2381:243-263. doi: 10.1007/978-1-0716-1740-3_14.
5
An inducible CRISPR interference library for genetic interrogation of Saccharomyces cerevisiae biology.用于对酿酒酵母生物学进行基因研究的可诱导CRISPR干扰文库。
Commun Biol. 2020 Nov 27;3(1):723. doi: 10.1038/s42003-020-01452-9.
6
Emerging and evolving concepts in gene essentiality.基因必需性的新兴和发展概念。
Nat Rev Genet. 2018 Jan;19(1):34-49. doi: 10.1038/nrg.2017.74. Epub 2017 Oct 16.
7
Interrogating Genes That Mediate Chlamydia trachomatis Survival in Cell Culture Using Conditional Mutants and Recombination.利用条件突变体和重组技术探究介导沙眼衣原体在细胞培养中存活的基因。
J Bacteriol. 2016 Jul 13;198(15):2131-9. doi: 10.1128/JB.00161-16. Print 2016 Aug 1.
8
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Genetics. 2014 Jun;197(2):451-65. doi: 10.1534/genetics.114.161620. Epub 2014 Jun 17.
9
DEG 10, an update of the database of essential genes that includes both protein-coding genes and noncoding genomic elements.DEG 10,一个基本基因数据库的更新版本,其中包括编码蛋白的基因和非编码基因组元件。
Nucleic Acids Res. 2014 Jan;42(Database issue):D574-80. doi: 10.1093/nar/gkt1131. Epub 2013 Nov 15.
10
Combining quantitative genetic footprinting and trait enrichment analysis to identify fitness determinants of a bacterial pathogen.结合定量遗传足迹分析和性状富集分析鉴定细菌病原体的适应度决定因素。
PLoS Genet. 2013;9(8):e1003716. doi: 10.1371/journal.pgen.1003716. Epub 2013 Aug 22.
酿酒酵母中的酸性磷酸酶多肽由一个差异调控的多基因家族编码。
Proc Natl Acad Sci U S A. 1982 Apr;79(7):2157-61. doi: 10.1073/pnas.79.7.2157.
4
Ty elements transpose through an RNA intermediate.Ty 元件通过 RNA 中间体进行转座。
Cell. 1985 Mar;40(3):491-500. doi: 10.1016/0092-8674(85)90197-7.
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EMBO J. 1991 Sep;10(9):2627-34. doi: 10.1002/j.1460-2075.1991.tb07805.x.