Verbarg Susanne, Frühling Anja, Cousin Sylvie, Brambilla Evelyne, Gronow Sabine, Lünsdorf Heinrich, Stackebrandt Erko
DSMZ-German Collection of Microorganisms and Cell Cultures GmbH, Inhoffenstr. 7B, 38124, Braunschweig, Germany.
Curr Microbiol. 2008 Jun;56(6):603-8. doi: 10.1007/s00284-008-9133-9. Epub 2008 Mar 7.
Bacterial strain BF36T, isolated from the biofilm of a tufa deposit in a hard water rivulet, was characterized by a polyphasic taxonomic approach. Cells of these organisms were Gram-negative, motile, nonpigmented, rod-shaped, non-endospore-forming, and facultatively anaerobic. Cells, organized in loose consortia, were coated by a massive slime layer. Phylogenetic analyses using 16S rRNA gene sequences showed that strain BF36T was a member of the family Enterobacteriaceae, class Gammaproteobacteria, displaying a moderate degree of relationship (96.5% sequence similarity) to Sodalis glossinidius and "Sodalis pallipedes," intracellular symbionts of the tsetse fly Glossinis morsitans morsitans. Dendrograms of relationship generated by different algorithms consistently grouped isolate BF36T with Sodalis glossinidius, Pragia fontium, Budvicia aquatica, Serratia rubideae, and Brenneria spp (94.7-95.8% similarity) which also share many common metabolic properties. Differences between strain BF36T and Sodalis glossinidius DSM 13495T are seen in motility and in the pattern of substrates utilized. Membership to the family was also confirmed by a fatty acid profile consisting of major amounts of C16:0)and C16:1omega7, by the presence of isoprenoids of the ubiquinone Q8 and menaquinone MK8 types and a DNA G + C content of 54.2 mol%. The decision to classify strain BF36T into a new genus Biostraticola gen. nov. is based on its distant phylogenetic position as compared to any other representative of the family and the significant phenotypic differences to its nearest phylogenetic neighbor, Sodalis glossinidius. BF36T represents the type species, for which the name Biostraticola tofi sp. nov. is proposed. The type strain is BF36T (DSM 19580T; CIP109699T).
从硬水小溪中钙华沉积物的生物膜分离出的细菌菌株BF36T,采用多相分类法进行了表征。这些生物体的细胞为革兰氏阴性、具运动性、无色素、杆状、不形成芽孢且兼性厌氧。细胞以松散聚集体形式存在,被一层厚厚的黏液层包裹。使用16S rRNA基因序列进行的系统发育分析表明,菌株BF36T是肠杆菌科、γ-变形菌纲的成员,与采采蝇Glossinis morsitans morsitans的细胞内共生体Sodalis glossinidius和“Sodalis pallipedes”显示出中等程度的亲缘关系(序列相似性为96.5%)。由不同算法生成的亲缘关系树状图一致地将分离株BF36T与Sodalis glossinidius、Pragia fontium、Budvicia aquatica、Serratia rubideae和Brenneria spp归为一组(相似性为94.7 - 95.8%),它们也具有许多共同的代谢特性。菌株BF36T与Sodalis glossinidius DSM 13495T在运动性和利用底物的模式上存在差异。由大量C16:0和C16:1ω7组成的脂肪酸谱、泛醌Q8和甲基萘醌MK8类型类异戊二烯的存在以及DNA G + C含量为54.2 mol%也证实了其属于该科。将菌株BF36T分类到一个新属Biostraticola gen. nov.的决定是基于其与该科任何其他代表相比较远的系统发育位置以及与其最接近的系统发育邻居Sodalis glossinidius的显著表型差异。BF36T代表模式种,为此提出名称Biostraticola tofi sp. nov.。模式菌株为BF36T(DSM 19580T;CIP109699T)。