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海洋来源的红杆菌科 Rubricoccus marinus 属的新种。

Rubricoccus marinus gen. nov., sp. nov., of the family 'Rhodothermaceae', isolated from seawater.

机构信息

Institute of Molecular and Cellular Biosciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-Ku, Tokyo 113-0032, Japan.

Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8564, Japan.

出版信息

Int J Syst Evol Microbiol. 2011 Sep;61(Pt 9):2069-2072. doi: 10.1099/ijs.0.026294-0. Epub 2010 Sep 17.

Abstract

A coccoid- and amorphous-shaped, non-gliding, reddish bacterium, designated SG-29(T), was isolated from seawater in the western North Pacific Ocean near Japan. The strain was Gram-stain-negative, obligately aerobic, heterotrophic and catalase-positive. Nitrate was reduced to nitrogen and acid was produced from aesculin, turanose, 2-keto-gluconate and arabinose. Growth occurred with 1-5 % NaCl (optimum 2 % NaCl) and at 5-37 °C (optimum 20-30 °C). The G+C content of genomic DNA was 68.9 mol% (HPLC). The predominant isoprenoid quinone was MK-7 and the major cellular fatty acids (>10 %) were iso-C₁₇:₁ω9c, C₁₇:₁ω8c and iso-C₁₇:₀. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SG-29(T) belonged to the phylum Bacteroidetes. The most closely related strain was Rhodothermus obamensis JCM 9785(T), with which the isolate exhibited 86.1 % 16S rRNA gene sequence similarity. On the basis of phenotypic and phylogenetic features, strain SG-29(T) is classified in a novel genus and species within the family 'Rhodothermaceae', for which the name Rubricoccus marinus gen. nov., sp. nov. ( = NBRC 107124(T)  = KCTC 23197(T)) is proposed.

摘要

从日本附近西太平洋的海水中分离到一株呈球菌形和不定形、非滑行、略带红色的革兰氏阴性需氧异养型细菌,命名为 SG-29(T) 菌株。该菌株能还原硝酸盐为氮气,能产酸,可利用的碳源有表儿茶精、棉子糖、2-酮葡萄糖酸和阿拉伯糖。在 1-5%NaCl(最佳 2%NaCl)和 5-37°C(最佳 20-30°C)的条件下生长。基因组 DNA 的 G+C 含量为 68.9 mol%(HPLC)。主要的异戊二烯醌为 MK-7,主要的细胞脂肪酸(>10%)为 iso-C₁₇:₁ω9c、C₁₇:₁ω8c 和 iso-C₁₇:₀。基于 16S rRNA 基因序列的系统发育分析表明,SG-29(T) 菌株属于厚壁菌门。与最接近的菌株 Rhodothermus obamensis JCM 9785(T) 的 16S rRNA 基因序列相似性为 86.1%。根据表型和系统发育特征,SG-29(T) 菌株被分类到红杆菌科的一个新属和新种,命名为 Rubricoccus marinus 属,种名。nov.(=NBRC 107124(T)=KCTC 23197(T))。

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