Laboratory of Protistology and Aquatic Ecology, Ghent University, Ghent, Belgium.
PLoS One. 2011 May 5;6(5):e19561. doi: 10.1371/journal.pone.0019561.
Free-living microorganisms have long been assumed to have ubiquitous distributions with little biogeographic signature because they typically exhibit high dispersal potential and large population sizes. However, molecular data provide contrasting results and it is far from clear to what extent dispersal limitation determines geographic structuring of microbial populations. We aimed to determine biogeographical patterns of the bloom-forming freshwater cyanobacterium Microcystis aeruginosa. Being widely distributed on a global scale but patchily on a regional scale, this prokaryote is an ideal model organism to study microbial dispersal and biogeography.
METHODOLOGY/PRINCIPAL FINDINGS: The phylogeography of M. aeruginosa was studied based on a dataset of 311 rDNA internal transcribed spacer (ITS) sequences sampled from six continents. Richness of ITS sequences was high (239 ITS types were detected). Genetic divergence among ITS types averaged 4% (maximum pairwise divergence was 13%). Preliminary analyses revealed nearly completely unresolved phylogenetic relationships and a lack of genetic structure among all sequences due to extensive homoplasy at multiple hypervariable sites. After correcting for this, still no clear phylogeographic structure was detected, and no pattern of isolation by distance was found on a global scale. Concomitantly, genetic differentiation among continents was marginal, whereas variation within continents was high and was mostly shared with all other continents. Similarly, no genetic structure across climate zones was detected.
CONCLUSIONS/SIGNIFICANCE: The high overall diversity and wide global distribution of common ITS types in combination with the lack of phylogeographic structure suggest that intercontinental dispersal of M. aeruginosa ITS types is not rare, and that this species might have a truly cosmopolitan distribution.
自由生活的微生物通常被认为具有无处不在的分布,几乎没有生物地理特征,因为它们通常具有很高的扩散潜力和较大的种群规模。然而,分子数据提供了相反的结果,而且到什么程度扩散限制决定微生物种群的地理结构还远不清楚。我们旨在确定形成水华的淡水蓝藻铜绿微囊藻的生物地理模式。这种原核生物在全球范围内广泛分布,但在区域范围内呈斑块状分布,是研究微生物扩散和生物地理学的理想模式生物。
方法/主要发现:基于从六大洲采集的 311 个 rDNA 内部转录间隔区(ITS)序列数据集,研究了铜绿微囊藻的系统地理学。ITS 序列的丰富度很高(检测到 239 种 ITS 类型)。ITS 类型之间的遗传分歧平均为 4%(最大的成对分歧为 13%)。初步分析显示,由于多个高变位点的广泛同源性,几乎完全无法解析的系统发育关系和所有序列之间缺乏遗传结构。在纠正这些问题后,仍然没有检测到明显的地理结构,也没有在全球范围内发现距离隔离的模式。同时,各大洲之间的遗传分化微不足道,而各大洲内部的变异则很高,并且与其他各大洲大多共享。同样,也没有检测到跨越气候带的遗传结构。
结论/意义:常见 ITS 类型的总体多样性高和全球分布广泛,再加上缺乏地理结构,表明铜绿微囊藻 ITS 类型的洲际扩散并不罕见,该物种可能具有真正的世界性分布。