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基于 ²H 和 ¹⁵N/¹H 固体核磁共振数据分析的跨膜肽取向和动力学的联合分析。

On the combined analysis of ²H and ¹⁵N/¹H solid-state NMR data for determination of transmembrane peptide orientation and dynamics.

机构信息

Department of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas, USA.

出版信息

Biophys J. 2011 Dec 21;101(12):2939-47. doi: 10.1016/j.bpj.2011.11.008. Epub 2011 Dec 20.

Abstract

The dynamics of membrane-spanning peptides have a strong affect on the solid-state NMR observables. We present a combined analysis of ²H-alanine quadrupolar splittings together with ¹⁵N/(1)H dipolar couplings and ¹⁵N chemical shifts, using two models to treat the dynamics, for the systematic evaluation of transmembrane peptides based on the GWALP23 sequence (acetyl-GGALW(LA)₆LWLAGA-amide). The results indicate that derivatives of GWALP23 incorporating diverse guest residues adopt a range of apparent tilt angles that span 5°-35° in lipid bilayer membranes. By comparing individual and combined analyses of specifically ²H- or ¹⁵N-labeled peptides incorporated in magnetically or mechanically aligned lipid bilayers, we examine the influence of data-set size/identity, and of explicitly modeled dynamics, on the deduced average orientations of the peptides. We conclude that peptides with small apparent tilt values (<∼10°) can be fitted by extensive families of solutions, which can be narrowed by incorporating additional ¹⁵N as well as ²H restraints. Conversely, peptides exhibiting larger tilt angles display more narrow distributions of tilt and rotation that can be fitted using smaller sets of experimental constraints or even with ²H or ¹⁵N data alone. Importantly, for peptides that tilt significantly more than 10° from the bilayer-normal, the contribution from rigid body dynamics can be approximated by a principal order parameter.

摘要

跨膜肽的动力学对固态 NMR 可观测值有很强的影响。我们提出了一种综合分析 ²H-丙氨酸四极分裂与 ¹⁵N/(1)H 偶极耦合和 ¹⁵N 化学位移的方法,使用两种模型来处理动力学,用于基于 GWALP23 序列(乙酰-GGALW(LA)₆LWLAGA-酰胺)的跨膜肽的系统评估。结果表明,包含不同客体残基的 GWALP23 衍生物在脂质双层膜中采用一系列明显的倾斜角度,范围为 5°-35°。通过比较在磁或机械排列的脂质双层中特异性标记的 ²H 或 ¹⁵N 标记肽的个体和综合分析,我们研究了数据集大小/身份以及明确建模动力学对肽推断平均取向的影响。我们得出结论,具有较小表观倾斜值(<∼10°)的肽可以通过广泛的解族拟合,通过包含额外的 ¹⁵N 以及 ²H 约束可以将其缩小。相反,显示出较大倾斜角度的肽显示出更窄的倾斜和旋转分布,可以使用更小的实验约束集拟合,甚至可以仅使用 ²H 或 ¹⁵N 数据拟合。重要的是,对于倾斜角度超过双层法线 10°的肽,刚性体动力学的贡献可以通过主序参量近似。

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