Ghiassian Sina, Greiner Russell, Jin Ping, Brown Matthew R G
Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada.
Alberta Machine Learning Institute (AMII), formerly Alberta Innovates Centre for Machine Learning (AICML), Edmonton, Alberta, Canada.
PLoS One. 2016 Dec 28;11(12):e0166934. doi: 10.1371/journal.pone.0166934. eCollection 2016.
A clinical tool that can diagnose psychiatric illness using functional or structural magnetic resonance (MR) brain images has the potential to greatly assist physicians and improve treatment efficacy. Working toward the goal of automated diagnosis, we propose an approach for automated classification of ADHD and autism based on histogram of oriented gradients (HOG) features extracted from MR brain images, as well as personal characteristic data features. We describe a learning algorithm that can produce effective classifiers for ADHD and autism when run on two large public datasets. The algorithm is able to distinguish ADHD from control with hold-out accuracy of 69.6% (over baseline 55.0%) using personal characteristics and structural brain scan features when trained on the ADHD-200 dataset (769 participants in training set, 171 in test set). It is able to distinguish autism from control with hold-out accuracy of 65.0% (over baseline 51.6%) using functional images with personal characteristic data when trained on the Autism Brain Imaging Data Exchange (ABIDE) dataset (889 participants in training set, 222 in test set). These results outperform all previously presented methods on both datasets. To our knowledge, this is the first demonstration of a single automated learning process that can produce classifiers for distinguishing patients vs. controls from brain imaging data with above-chance accuracy on large datasets for two different psychiatric illnesses (ADHD and autism). Working toward clinical applications requires robustness against real-world conditions, including the substantial variability that often exists among data collected at different institutions. It is therefore important that our algorithm was successful with the large ADHD-200 and ABIDE datasets, which include data from hundreds of participants collected at multiple institutions. While the resulting classifiers are not yet clinically relevant, this work shows that there is a signal in the (f)MRI data that a learning algorithm is able to find. We anticipate this will lead to yet more accurate classifiers, over these and other psychiatric disorders, working toward the goal of a clinical tool for high accuracy differential diagnosis.
一种能够利用功能性或结构性磁共振(MR)脑图像诊断精神疾病的临床工具,有潜力极大地帮助医生并提高治疗效果。为实现自动诊断的目标,我们提出了一种基于从MR脑图像中提取的方向梯度直方图(HOG)特征以及个人特征数据特征,对注意力缺陷多动障碍(ADHD)和自闭症进行自动分类的方法。我们描述了一种学习算法,该算法在两个大型公共数据集上运行时,能够为ADHD和自闭症生成有效的分类器。当在ADHD - 200数据集(训练集769名参与者,测试集171名参与者)上进行训练时,该算法使用个人特征和结构性脑扫描特征,能够以69.6%的留一法准确率(超过基线55.0%)将ADHD与对照组区分开来。当在自闭症脑成像数据交换(ABIDE)数据集(训练集889名参与者,测试集222名参与者)上进行训练时,该算法使用带有个人特征数据的功能性图像,能够以65.0%的留一法准确率(超过基线51.6%)将自闭症与对照组区分开来。这些结果在两个数据集上均优于所有先前提出的方法。据我们所知,这是首次展示一个单一的自动学习过程,该过程能够在针对两种不同精神疾病(ADHD和自闭症)的大型数据集上,从脑成像数据中生成具有高于随机水平准确率的区分患者与对照组的分类器。朝着临床应用方向发展需要针对现实世界条件具备稳健性,包括不同机构收集的数据中常常存在的显著变异性。因此,我们的算法在大型ADHD - 200和ABIDE数据集上取得成功很重要,这些数据集包含了在多个机构收集的数百名参与者的数据。虽然所得分类器目前与临床无关,但这项工作表明在功能磁共振成像(fMRI)数据中存在一种学习算法能够找到的信号。我们预计这将导致针对这些及其他精神疾病生成更准确的分类器,朝着高精度鉴别诊断临床工具的目标迈进。