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大白菜中CDPK-SnRK超家族基因的综合分析及其在植物中的进化意义

Comprehensive Analysis of the CDPK-SnRK Superfamily Genes in Chinese Cabbage and Its Evolutionary Implications in Plants.

作者信息

Wu Peng, Wang Wenli, Duan Weike, Li Ying, Hou Xilin

机构信息

State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural University Nanjing, China.

State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, Nanjing Agricultural UniversityNanjing, China; School of Life Science and Food Engineering, Huaiyin Institute of TechnologyHuaian, China.

出版信息

Front Plant Sci. 2017 Feb 10;8:162. doi: 10.3389/fpls.2017.00162. eCollection 2017.

DOI:10.3389/fpls.2017.00162
PMID:28239387
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5301275/
Abstract

The CDPK-SnRK (calcium-dependent protein kinase/Snf1-related protein kinase) gene superfamily plays important roles in signaling pathways for disease resistance and various stress responses, as indicated by emerging evidence. In this study, we constructed comparative analyses of gene structure, retention, expansion, whole-genome duplication (WGD) and expression patterns of CDPK-SnRK genes in and their evolution in plants. A total of 49 , 14 , 3 , 5 , and 56 s were identified in . All BrCDPK-SnRK proteins had highly conserved kinase domains. By statistical analysis of the number of CDPK-SnRK genes in each species, we found that the expansion of the CDPK-SnRK gene family started from angiosperms. Segmental duplication played a predominant role in CDPK-SnRK gene expansion. The analysis showed that PEPRK was more preferentially retained than other subfamilies and that CPK was retained similarly to SnRK. Among the CPKs and SnRKs, CPKIII and SnRK1 genes were more preferentially retained than other groups. CRK was closest to CPK, which may share a common evolutionary origin. In addition, we identified 196 CPK genes and 252 SnRK genes in 6 species, and their different expansion and evolution types were discovered. Furthermore, the expression of genes is dynamic in different tissues as well as in response to abiotic stresses, demonstrating their important roles in development in . In summary, this study provides genome-wide insight into the evolutionary history and mechanisms of CDPK-SnRK genes following whole-genome triplication in .

摘要

如最新证据所示，CDPK-SnRK（钙依赖蛋白激酶/蔗糖非发酵-1相关蛋白激酶）基因超家族在抗病信号通路和各种应激反应中发挥着重要作用。在本研究中，我们构建了对[具体物种]中CDPK-SnRK基因的基因结构、保留、扩增、全基因组复制（WGD）和表达模式的比较分析，以及它们在植物中的进化情况。在[具体物种]中总共鉴定出49个[具体基因类型1]、14个[具体基因类型2]、3个[具体基因类型3]、5个[具体基因类型4]和56个[具体基因类型5]。所有BrCDPK-SnRK蛋白都具有高度保守的激酶结构域。通过对每个物种中CDPK-SnRK基因数量的统计分析，我们发现CDPK-SnRK基因家族的扩增始于被子植物。片段重复在CDPK-SnRK基因扩增中起主要作用。分析表明，PEPRK比其他亚家族更优先保留，CPK的保留情况与SnRK相似。在CPKs和SnRKs中，CPKIII和SnRK1基因比其他组更优先保留。CRK与CPK最接近，它们可能有共同的进化起源。此外，我们在6个物种中鉴定出196个CPK基因和252个SnRK基因，并发现了它们不同的扩增和进化类型。此外，[具体基因]在不同组织以及对非生物胁迫的响应中表达是动态的，表明它们在[具体物种]发育中发挥着重要作用。总之，本研究提供了对[具体物种]全基因组三倍化后CDPK-SnRK基因进化历史和机制的全基因组见解。

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