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哺乳动物细胞中的基于合成 RNA 的逻辑计算。

Synthetic RNA-based logic computation in mammalian cells.

机构信息

Department of Life Science Frontiers, Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, 606-8507, Japan.

Graduate School of Medicine, Kyoto University, Kyoto, 606-8501, Japan.

出版信息

Nat Commun. 2018 Nov 19;9(1):4847. doi: 10.1038/s41467-018-07181-2.

Abstract

Synthetic biological circuits are designed to regulate gene expressions to control cell function. To date, these circuits often use DNA-delivery methods, which may lead to random genomic integration. To lower this risk, an all RNA system, in which the circuit and delivery method are constituted of RNA components, is preferred. However, the construction of complexed circuits using RNA-delivered devices in living cells has remained a challenge. Here we show synthetic mRNA-delivered circuits with RNA-binding proteins for logic computation in mammalian cells. We create a set of logic circuits (AND, OR, NAND, NOR, and XOR gates) using microRNA (miRNA)- and protein-responsive mRNAs as decision-making controllers that are used to express transgenes in response to intracellular inputs. Importantly, we demonstrate that an apoptosis-regulatory AND gate that senses two miRNAs can selectively eliminate target cells. Thus, our synthetic RNA circuits with logic operation could provide a powerful tool for future therapeutic applications.

摘要

合成生物电路被设计用来调节基因表达以控制细胞功能。迄今为止,这些电路通常使用 DNA 传递方法,这可能导致随机基因组整合。为了降低这种风险,人们更喜欢使用全 RNA 系统,其中电路和传递方法由 RNA 组成。然而,在活细胞中使用 RNA 传递设备构建复杂的电路仍然是一个挑战。在这里,我们展示了使用 RNA 结合蛋白的合成 mRNA 传递电路,用于在哺乳动物细胞中进行逻辑计算。我们使用 microRNA (miRNA) 和蛋白反应的 mRNA 作为决策控制器,创建了一组逻辑电路(与门、或门、与非门、或非门和异或门),用于根据细胞内输入表达转基因。重要的是,我们证明了一个感知两个 miRNA 的凋亡调节与门可以选择性地消除靶细胞。因此,我们具有逻辑运算功能的合成 RNA 电路可以为未来的治疗应用提供一种强大的工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/892f/6242901/ea0a40ff21ee/41467_2018_7181_Fig1_HTML.jpg

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