Norton Kerri-Ann, Gong Chang, Jamalian Samira, Popel Aleksander S
Department of Biomedical Engineering, School of Medicine, Johns Hopkins University, Baltimore, MD 21205, USA.
Computer Science Program, Department of Science, Mathematics, and Computing, Bard College, Annandale-on-Hudson, NY 12504, USA.
Processes (Basel). 2019 Jan;7(1). doi: 10.3390/pr7010037. Epub 2019 Jan 13.
Multiscale systems biology and systems pharmacology are powerful methodologies that are playing increasingly important roles in understanding the fundamental mechanisms of biological phenomena and in clinical applications. In this review, we summarize the state of the art in the applications of agent-based models (ABM) and hybrid modeling to the tumor immune microenvironment and cancer immune response, including immunotherapy. Heterogeneity is a hallmark of cancer; tumor heterogeneity at the molecular, cellular, and tissue scales is a major determinant of metastasis, drug resistance, and low response rate to molecular targeted therapies and immunotherapies. Agent-based modeling is an effective methodology to obtain and understand quantitative characteristics of these processes and to propose clinical solutions aimed at overcoming the current obstacles in cancer treatment. We review models focusing on intra-tumor heterogeneity, particularly on interactions between cancer cells and stromal cells, including immune cells, the role of tumor-associated vasculature in the immune response, immune-related tumor mechanobiology, and cancer immunotherapy. We discuss the role of digital pathology in parameterizing and validating spatial computational models and potential applications to therapeutics.
多尺度系统生物学和系统药理学是强大的方法,在理解生物现象的基本机制和临床应用中发挥着越来越重要的作用。在本综述中,我们总结了基于主体的模型(ABM)和混合建模在肿瘤免疫微环境和癌症免疫反应(包括免疫治疗)应用方面的最新进展。异质性是癌症的一个标志;分子、细胞和组织尺度上的肿瘤异质性是转移、耐药性以及对分子靶向治疗和免疫治疗低反应率的主要决定因素。基于主体的建模是一种有效的方法,用于获取和理解这些过程的定量特征,并提出旨在克服当前癌症治疗障碍的临床解决方案。我们综述了关注肿瘤内异质性的模型,特别是癌细胞与基质细胞(包括免疫细胞)之间的相互作用、肿瘤相关脉管系统在免疫反应中的作用、免疫相关的肿瘤力学生物学以及癌症免疫治疗。我们讨论了数字病理学在参数化和验证空间计算模型方面的作用以及在治疗学中的潜在应用。