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用于聚类结构预测的基于拓扑学的机器学习策略

Topology-Based Machine Learning Strategy for Cluster Structure Prediction.

作者信息

Chen Xin, Chen Dong, Weng Mouyi, Jiang Yi, Wei Guo-Wei, Pan Feng

机构信息

School of Advanced Materials, Shenzhen Graduate School, Peking University, Shenzhen 518055, People's Republic of China.

Department of Mathematics, Michigan State University, East Lansing, Michigan 48824, United States.

出版信息

J Phys Chem Lett. 2020 Jun 4;11(11):4392-4401. doi: 10.1021/acs.jpclett.0c00974. Epub 2020 May 21.

DOI:10.1021/acs.jpclett.0c00974
PMID:32320253
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7351018/
Abstract

In cluster physics, the determination of the ground-state structure of medium-sized and large-sized clusters is a challenge due to the number of local minimal values on the potential energy surface growing exponentially with cluster size. Although machine learning approaches have had much success in materials sciences, their applications in clusters are often hindered by the geometric complexity clusters. Persistent homology provides a new topological strategy to simplify geometric complexity while retaining important chemical and physical information without having to "downgrade" the original data. We further propose persistent pairwise independence (PPI) to enhance the predictive power of persistent homology. We construct topology-based machine learning models to reveal hidden structure-energy relationships in lithium (Li) clusters. We integrate the topology-based machine learning models, a particle swarm optimization algorithm, and density functional theory calculations to accelerate the search of the globally stable structure of clusters.

摘要

在团簇物理学中,由于势能面上局部极小值的数量随团簇尺寸呈指数增长,确定中型和大型团簇的基态结构是一项挑战。尽管机器学习方法在材料科学中取得了很大成功,但其在团簇中的应用常常受到团簇几何复杂性的阻碍。持久同调提供了一种新的拓扑策略,可简化几何复杂性,同时保留重要的化学和物理信息,而无需“降维”原始数据。我们进一步提出持久成对独立性(PPI)以增强持久同调的预测能力。我们构建基于拓扑的机器学习模型,以揭示锂(Li)团簇中隐藏的结构 - 能量关系。我们将基于拓扑的机器学习模型、粒子群优化算法和密度泛函理论计算相结合,以加速寻找团簇的全局稳定结构。

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本文引用的文献

1
Discovering unusual structures from exception using big data and machine learning techniques.利用大数据和机器学习技术从异常中发现异常结构。
Sci Bull (Beijing). 2019 May 15;64(9):612-616. doi: 10.1016/j.scib.2019.04.015. Epub 2019 Apr 5.
2
Neural Network Force Fields for Metal Growth Based on Energy Decompositions.基于能量分解的金属生长神经网络力场
J Phys Chem Lett. 2020 Feb 20;11(4):1364-1369. doi: 10.1021/acs.jpclett.9b03780. Epub 2020 Feb 4.
3
Mathematical deep learning for pose and binding affinity prediction and ranking in D3R Grand Challenges.
Brief Bioinform. 2024 Sep 23;25(6). doi: 10.1093/bib/bbae465.
4
Fully Exposed Cluster Catalyst (FECC): Toward Rich Surface Sites and Full Atom Utilization Efficiency.全暴露簇催化剂(FECC):迈向丰富的表面位点和全原子利用效率
ACS Cent Sci. 2021 Feb 24;7(2):262-273. doi: 10.1021/acscentsci.0c01486. Epub 2020 Dec 22.
用于 D3R 大挑战中的构象和结合亲和力预测和排序的数学深度学习。
J Comput Aided Mol Des. 2019 Jan;33(1):71-82. doi: 10.1007/s10822-018-0146-6. Epub 2018 Aug 16.
4
Data-Driven Learning of Total and Local Energies in Elemental Boron.基于数据驱动的元素硼中总能量和局域能量的学习。
Phys Rev Lett. 2018 Apr 13;120(15):156001. doi: 10.1103/PhysRevLett.120.156001.
5
TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions.拓扑网络:用于生物分子性质预测的基于拓扑的深度卷积和多任务神经网络。
PLoS Comput Biol. 2017 Jul 27;13(7):e1005690. doi: 10.1371/journal.pcbi.1005690. eCollection 2017 Jul.
6
Convolutional Embedding of Attributed Molecular Graphs for Physical Property Prediction.用于物理性质预测的属性分子图的卷积嵌入
J Chem Inf Model. 2017 Aug 28;57(8):1757-1772. doi: 10.1021/acs.jcim.6b00601. Epub 2017 Jul 25.
7
Extracting Crystal Chemistry from Amorphous Carbon Structures.从非晶碳结构中提取晶体化学。
Chemphyschem. 2017 Apr 19;18(8):873-877. doi: 10.1002/cphc.201700151. Epub 2017 Mar 8.
8
Machine Learning Energies of 2 Million Elpasolite (ABC_{2}D_{6}) Crystals.200万个铊铟锌卤化物(ABC₂D₆)晶体的机器学习能量
Phys Rev Lett. 2016 Sep 23;117(13):135502. doi: 10.1103/PhysRevLett.117.135502. Epub 2016 Sep 20.
9
A Statistical Learning Framework for Materials Science: Application to Elastic Moduli of k-nary Inorganic Polycrystalline Compounds.统计学习框架在材料科学中的应用:k 进制无机多晶化合物弹性模量的应用。
Sci Rep. 2016 Oct 3;6:34256. doi: 10.1038/srep34256.
10
Machine learning bandgaps of double perovskites.双钙钛矿的机器学习带隙
Sci Rep. 2016 Jan 19;6:19375. doi: 10.1038/srep19375.