: 首个海桐花科植物叶绿体基因组的完整序列
The complete chloroplast genome sequence of : the first Pittosporaceae plastome.
作者信息
Wang Yi, Zhao Chuan, Li Yunqing
机构信息
Laboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of Forestry, Kunming, People's Republic of China.
出版信息
Mitochondrial DNA B Resour. 2019 Nov 12;4(2):3959-3960. doi: 10.1080/23802359.2019.1688712.
The first complete chloroplast genome (cpDNA) sequence of was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 153,581 bp in length, contains a large single-copy region (LSC) of 84,940 bp and a small single-copy region (SSC) of 18,741 bp, which were separated by a pair of inverted repeats (IR) regions of 24,950 bp. The genome contains 132 genes, including 87 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 38.3%, and the corresponding values of the LSC, SSC, and IR regions are 36.5, 32.5, and 43.3%, respectively. Further, phylogenomic analysis showed that clustered in a unique clade in order Apiales.
在本研究中，通过Illumina HiSeq双端测序数据确定了首个完整的叶绿体基因组（cpDNA）序列。该cpDNA长度为153,581 bp，包含一个84,940 bp的大单拷贝区域（LSC）和一个18,741 bp的小单拷贝区域（SSC），它们被一对24,950 bp的反向重复（IR）区域隔开。该基因组包含132个基因，包括87个蛋白质编码基因、8个核糖体RNA基因和37个转移RNA基因。全基因组的总体GC含量为38.3%，LSC、SSC和IR区域的相应值分别为36.5%、32.5%和43.3%。此外，系统发育基因组分析表明，[物种名称]在伞形目一个独特的分支中聚类。
Zotero 插件