Yang Dejun, Qiu Qiong, Xu Linhong, Xu Yumei, Wang Yi
Institute of Tropical Forestry, Yunnan Academy of Forestry, Puwen, People's Republic of China.
Laboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of Forestry, Kunming, People's Republic of China.
Mitochondrial DNA B Resour. 2020 Jan 7;5(1):406-407. doi: 10.1080/23802359.2019.1704199.
The first complete chloroplast genome (cpDNA) sequence of was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 144,101 bp in length, contains a large single copy region (LSC) of 83,796 bp and a small single copy region (SSC) of 11,277 bp, which were separated by a pair of inverted repeats (IR) regions of 24,514 bp. The genome contains 123 genes, including 80 protein-coding genes, 8 ribosomal RNA genes, and 35 transfer RNA genes. The overall GC content of the whole genome is 38.0%, and the corresponding values of the LSC, SSC, and IR regions are 35.9%, 31.4%, and 43.1%, respectively. Further phylogenomic analysis showed that and clustered in a clade in Santalales order.
本研究通过Illumina HiSeq双端测序数据确定了[物种名称]的首个完整叶绿体基因组（cpDNA）序列。该cpDNA长度为144,101bp，包含一个83,796bp的大单拷贝区域（LSC）和一个11,277bp的小单拷贝区域（SSC），它们被一对24,514bp的反向重复（IR）区域隔开。该基因组包含123个基因，包括80个蛋白质编码基因、8个核糖体RNA基因和35个转运RNA基因。全基因组的总体GC含量为38.0%，LSC、SSC和IR区域的相应值分别为35.9%、31.4%和43.1%。进一步的系统发育基因组分析表明，[物种名称]和[另一物种名称]在檀香目一个分支中聚类。
