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自动分割海马体在海马体保留全脑放疗中的应用:一种多任务边缘感知学习。

Automatic segmentation of hippocampus in hippocampal sparing whole brain radiotherapy: A multitask edge-aware learning.

机构信息

Department of Radiation Oncology, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Sciences, Ji'nan, P.R. China.

Perception Vision Medical Technologies Co. Ltd., Guangzhou, Guangdong, P.R. China.

出版信息

Med Phys. 2021 Apr;48(4):1771-1780. doi: 10.1002/mp.14760. Epub 2021 Mar 9.

Abstract

PURPOSE

This study aimed to improve the accuracy of the hippocampus segmentation through multitask edge-aware learning.

METHOD

We developed a multitask framework for computerized hippocampus segmentation. We used three-dimensional (3D) U-net as our backbone model with two training objectives: (a) to minimize the difference between the targeted binary mask and the model prediction; and (b) to optimize an auxiliary edge-prediction task which is designed to guide the model detection of the weak boundary of the hippocampus in model optimization. To balance the multiple task objectives, we proposed an improved gradient normalization by adaptively adjusting the weight of losses from different tasks. A total of 247 T1-weighted MRIs including 131 without contrast and 116 with contrast were collected from 247 patients to train and validate the proposed method. Segmentation was quantitatively evaluated with the dice coefficient (Dice), Hausdorff distance (HD), and average Hausdorff distance (AVD). The 3D U-net was used for baseline comparison. We used a Wilcoxon signed-rank test to compare repeated measurements (Dice, HD, and AVD) by different segmentations.

RESULTS

Through fivefold cross-validation, our multitask edge-aware learning achieved Dice of 0.8483 ± 0.0036, HD of 7.5706 ± 1.2330 mm, and AVD of 0.1522 ± 0.0165 mm, respectively. Conversely, the baseline results were 0.8340 ± 0.0072, 10.4631 ± 2.3736 mm, and 0.1884 ± 0.0286 mm, respectively. With a Wilcoxon signed-rank test, we found that the differences between our method and the baseline were statistically significant (P < 0.05).

CONCLUSION

Our results demonstrated the efficiency of multitask edge-aware learning in hippocampus segmentation for hippocampal sparing whole-brain radiotherapy. The proposed framework may also be useful for other low-contrast small organ segmentations on medical imaging modalities.

摘要

目的

本研究旨在通过多任务边缘感知学习提高海马体分割的准确性。

方法

我们开发了一种用于计算机化海马体分割的多任务框架。我们使用三维(3D)U-net 作为我们的骨干模型,并具有两个训练目标:(a)最小化目标二值掩模与模型预测之间的差异;(b)优化辅助边缘预测任务,该任务旨在引导模型在模型优化中检测海马体的弱边界。为了平衡多个任务目标,我们通过自适应调整来自不同任务的损失的权重提出了一种改进的梯度归一化。总共从 247 名患者中收集了 247 个 T1 加权 MRI,包括 131 个无对比和 116 个有对比,以训练和验证所提出的方法。分割通过 Dice 系数(Dice)、Hausdorff 距离(HD)和平均 Hausdorff 距离(AVD)进行定量评估。3D U-net 用于基线比较。我们使用 Wilcoxon 符号秩检验比较不同分割的重复测量(Dice、HD 和 AVD)。

结果

通过五折交叉验证,我们的多任务边缘感知学习分别实现了 0.8483±0.0036 的 Dice、7.5706±1.2330mm 的 HD 和 0.1522±0.0165mm 的 AVD。相比之下,基线结果分别为 0.8340±0.0072、10.4631±2.3736mm 和 0.1884±0.0286mm。通过 Wilcoxon 符号秩检验,我们发现我们的方法与基线之间的差异具有统计学意义(P<0.05)。

结论

我们的结果证明了多任务边缘感知学习在海马体保留全脑放疗中的海马体分割中的效率。该框架也可能对医学成像模式上其他低对比度小器官分割有用。

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