Li Qi, Yang Mary Qu
MidSouth Bioinformatics Center and Bioinformatics Graduate Program, University of Arkansas at Little Rock and University of Arkansas for Medical Sciences, University of Arkansas at Little Rock, Little Rock, AR, United States of America.
PeerJ. 2021 Feb 25;9:e10549. doi: 10.7717/peerj.10549. eCollection 2021.
Alzheimer's disease (AD) is a progressive neurodegenerative disorder, accounting for nearly 60% of all dementia cases. The occurrence of the disease has been increasing rapidly in recent years. Presently about 46.8 million individuals suffer from AD worldwide. The current absence of effective treatment to reverse or stop AD progression highlights the importance of disease prevention and early diagnosis. Brain structural Magnetic Resonance Imaging (MRI) has been widely used for AD detection as it can display morphometric differences and cerebral structural changes. In this study, we built three machine learning-based MRI data classifiers to predict AD and infer the brain regions that contribute to disease development and progression. We then systematically compared the three distinct classifiers, which were constructed based on Support Vector Machine (SVM), 3D Very Deep Convolutional Network (VGGNet) and 3D Deep Residual Network (ResNet), respectively. To improve the performance of the deep learning classifiers, we applied a transfer learning strategy. The weights of a pre-trained model were transferred and adopted as the initial weights of our models. Transferring the learned features significantly reduced training time and increased network efficiency. The classification accuracy for AD subjects from elderly control subjects was 90%, 95%, and 95% for the SVM, VGGNet and ResNet classifiers, respectively. Gradient-weighted Class Activation Mapping (Grad-CAM) was employed to show discriminative regions that contributed most to the AD classification by utilizing the learned spatial information of the 3D-VGGNet and 3D-ResNet models. The resulted maps consistently highlighted several disease-associated brain regions, particularly the cerebellum which is a relatively neglected brain region in the present AD study. Overall, our comparisons suggested that the ResNet model provided the best classification performance as well as more accurate localization of disease-associated regions in the brain compared to the other two approaches.
阿尔茨海默病(AD)是一种进行性神经退行性疾病,占所有痴呆病例的近60%。近年来,该疾病的发病率一直在迅速上升。目前,全球约有4680万人患有AD。目前缺乏有效的治疗方法来逆转或阻止AD的进展,这凸显了疾病预防和早期诊断的重要性。脑结构磁共振成像(MRI)已被广泛用于AD检测,因为它可以显示形态计量学差异和脑结构变化。在本研究中,我们构建了三个基于机器学习的MRI数据分类器,以预测AD并推断对疾病发展和进展有贡献的脑区。然后,我们系统地比较了这三个不同的分类器,它们分别基于支持向量机(SVM)、3D超深卷积网络(VGGNet)和3D深度残差网络(ResNet)构建。为了提高深度学习分类器的性能,我们应用了迁移学习策略。将预训练模型的权重进行转移并用作我们模型的初始权重。转移学习到的特征显著减少了训练时间并提高了网络效率。对于AD受试者与老年对照受试者的分类准确率,SVM、VGGNet和ResNet分类器分别为90%、95%和95%。利用梯度加权类激活映射(Grad-CAM),通过利用3D-VGGNet和3D-ResNet模型学习到的空间信息,展示对AD分类贡献最大的判别区域。结果图一致地突出了几个与疾病相关的脑区,特别是小脑,而小脑在目前的AD研究中是一个相对被忽视的脑区。总体而言,我们的比较表明,与其他两种方法相比,ResNet模型提供了最佳的分类性能以及对大脑中与疾病相关区域更准确的定位。